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For instance, the sequence with NCBI ID `FO905036` has `N` from base 87,615, with a feature marking the subsequence as a "gap"
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Input: EMBL/GeneBank file with multiple genomes/sequences.
Output: genomes.tsv + genomes-raw.fasta (or genomes-renamed.fasta)
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hi brian,
i can't find some parental gene in GeneBank or other website, for example :'AC092691.1'
here is my result
![image](https://user-images.githubusercontent.com/110949514/185785186-d30e14…
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Hi, as you know, the sequences in NCBI update ervery week,including the genebank ID and taxonomy and so on. So the databases you used will be updated or not?
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Hi Simroux:
I really appreciated this pipeline you contributed to the viral study.
This is a question. In the predictions, the comments in the genebank file were inconsistent with the information in…
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### Setup
I am reporting a problem with Biopython version 1.78, Python 3.8, and operating
system Windows 10 as follows:
### Expected behaviour
Write a GeneBank file from a SeqRecord object o…
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Could we add an 'other' category for annotation source that doesn't rely on having Ensembl or GeneBank IDs?
Related to having an import path for non coding biologists (#256) I could see two use cas…
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In the Germplasm service, there is the parameter "collection" which enables to get germplasm belonging to a specific collection. We need to have a new service to get the list of available germplasm co…
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Hi,
I am interested in using PLannotate on my own annotated file (e.g., in genebank format), how can I add this into the database? what formats are accepted in the database folder?
Thanks, apprecia…
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//双向BFS
BFS(string start,string end,vector& bank) {
unordered_set geneBank(bank.begin,bank.end());
unordered_set beginSet({start});
unordered_set endSet({end});
while (!begi…