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When I try to extract the per chromosome map files by doing either
```
tar xzvf maps/genetic_maps.b38.tar.gz
```
or
```
tar xvf maps/genetic_maps.b38.tar.gz
```
I get the following error:
`…
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when running the following command line
$ibdtools merge -i ${chr}.sibd -m ${chr}.meta -o ${chr}.mibd -M 10
ibdtools merge options received:
--ibd_in: 19.sibd
--meta_in: 19.meta
--ibd_out: 19.…
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**Is your feature request related to a problem? Please describe.**
`snp_cor` used in the `calculateLD.R` script can calculate correlation between SNPs using physical position or genetic distance. Ri…
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Hi!
I'm trying to re-use one of our standard genetic maps w/ QUILT (which in turns uses STITCH), and *some* of the genetic map files are generating the following error. The example (I think) stands o…
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### Content Types
- Genetic Maps
- List QTL on the current map.
- Trait Pages
- List QTL associated with the current trait through feature_cvterm.
- Genetic Marker Pages
- List the…
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Hi, will support for non-human genomes be added? Thanks!
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there is an implicit assumption that positional coordinates are made using sequencing maps (and therefore the unit of measure is a nucleotide/basepair or amino acid). however, this same model could b…
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We have the assembly name at the end of every genetic map; this should probably be the case for annotations also, so it's obvious if they don't match.
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I'm running GLIMPSE2_phase v2.0.0 which is up to date for 1 sample for chromosome 1.
Here is my script:
```bash
GLIMPSE2_phase --input-gl /data/GL_file_merged/high_dep_100.chr1.vcf.gz --reference …
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**Authors:** Frédéric Guillaume, Olivier Cotto, Max Schmid, Jobran Chebib
**Source code:** [WEBSITE](http://nemo2.sourceforge.net/)
**License:** GPL
**Abstract:** Nemo is an individual-based, for…