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I used below command to map one wheat genome against reference in a 32 cpu and 1TByte machine.
minimap2 -x asm5 -f100 -K4g --cs=long -t 32 --secondary=no iwgsc_refseqv2.1_assembly.fa arinalr_sm.fa…
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Search for a GO term in the data portal should use a mapping file to check mapping files since the GO terms aren't stored directly in the data files.
The KEGG -> GO mapping file is https://www.geno…
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Hi,
Thank you for developing this tool for evaluating L1 expression. I'm encountering an issue while running L1EM from a conda environment. Here is my setup and the steps I followed:
**Environme…
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3 genomes are offered for each species. This is the result of soft, hard and not masked genome versions. Not masked and soft-masked genomes are identical for purposes of transcript mapping (repetitive…
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Thanks for providing these mappings, @aculm.
`GENEPIO` and `OMIT` aren't defined as prefixes yet. That's an error condition but it isn't super visible in the standard build process. We haven't us…
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There are transgenic viruses in Genbank that have human virus taxids. For example,
* https://www.ncbi.nlm.nih.gov/nuccore/MK733609.1 - "Human gammaherpesvirus 8 transgenic clone BAC16, complete ge…
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I think your objective is clear, but I have some confusion about the execution.
You mention that you intend on visualizing your alignments with `progressiveMauve`. Despite the problems associated w…
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### System information
- Ubuntu 22.04
- 1.0.5
- Cloud
### Description of the Issue
The `format` command with `--generate-metadata` crashes for a filename that doesn't contain `GCST`, even if the …
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Hello Dr. Cheng and community,
I recently used hifiasm to assemble a allotetraploidy genome, and my command is `hifiasm -o out -t60 --primary --h1 hic_1.fq.gz --h2 hic_2.fq.gz ccs.fastq.gz`. HiFias…
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Hi,
thank you for this great tool.
I am running spacemake for an openST data and encountering the following Error when running `spacemake run --cores 8`:
```Error
KeyError in line 286 of /ho…