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Trying to get predictions using the ReadME tutorial and getting the below error during run_prediction.py
```
09/23/2024 21:12:42 - INFO - __main__ - ***** Running prediction *****
09/23/2024 2…
nal10 updated
2 weeks ago
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This is an incomplete list, but for example:
1. "too many open files" errors occur in Bash for large numbers of genomes. At a minimum adjusting ulimit for these might be a good idea, but it would b…
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Hi!
I've run `pgv-pmauve` with `Example 1 test data` and encountered an error
```2024-10-04 19:12:21 | INFO | Run pyGenomeViz v1.4.1 CLI workflow (pgv-pmauve)
2024-10-04 19:12:21 | INFO | $ pgv-pma…
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**Note: not yet final**
release rs220 from GTDB: https://data.ace.uq.edu.au/public/gtdb/data/releases/release220/
sourmash databases constructed by @ccbaumler 🎉 using [directsketch](https://gith…
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Dear KrakenUniq team,
I have a theoretical question - I was wondering if you could suggest something here. I am using KrakenUniq to classify bacterial reads from RNA-seq experiments. The database …
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For the 266,805 genomes in the pigeon 1.0 database:
**genome length info:**
min: 1,609 bp
max: 1,145,228 bp
median: 17,304 bp
mean: 23,902 bp
**summary stats for number of hashes per…
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Hello,after using `xpore dataprep --eventalign eventalign.txt --out_dir dataprep`, it output a datarep file, but it is only 8m in size. When I open data.log, it shows:
Total 1 transcripts - SUCCESSF…
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I noticed that a lot of memory is used when `link_clusters.pl` is run in parallel. Can you explain what would determine the memory usage for each execution of this script? Depending on the response, …
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## Sept 26, 2024
@natefoo started the process:
- Galaxy dbKeys will be set to GenBank or RefSeq IDs (`assembly version ID` column in https://brc-analytics.org/data/organisms)
- Names (in tool dropdo…
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I just recently found out about miniprot and have been testing it out as an alternative to MetaEuk in my VEBA metagenomics workflow software suite (https://github.com/jolespin/veba). When I ran minip…