-
Hey all-- I'm opening up an issue for us to start bashing away at an outline for the second paper. a particular goal is to have a solid list of the analyses we want to do and then later, delegation of…
-
> Advanced machine learning models applied to large-scale genomics datasets hold the promise to be major drivers for genome science. Once trained, such models can serve as a tool to probe the relation…
-
-
Hi, it's me again with some different questions. I've been running GAUDI on chromosome 22 with a 2-way African American sample set, but the training step is taking too long. It took me over a day to t…
-
After preparing the required input, the pipeline can't seem to find the specified files or output directory. I don't see in the log files whether or not my sample file is recognized. I am hoping that…
-
**Background**:
- cBioPortal: [cBioPortal](https://github.com/cBioPortal/GSoC/issues/www.cbioportal.org) is an open-source platform for cancer genomics data analysis and visualization. It provides a…
inodb updated
5 months ago
-
Opening this issue on behalf of Anush @anushchp:
#### Problem description
> It complains that O2 consuming reactions don’t have fixed bounds. Thermodynamics (using pyTFA: https://github.com/EPFL-…
-
Heyhey, could you add the following biography to the website? I've also attached my picture to the post.
Thanks a lot!
### Lancelot Seillier, M.Sc.
Scientific Researcher / Bioinformatician
…
-
> A lack of tools to precisely control gene expression has limited our ability to evaluate relationships between expression levels and phenotypes. Here, we describe an approach to titrate expression o…
-
#### A reconstruction is a the broad database of reactions, and becomes a model when it is initialised with constraints.
> The difference between a reconstruction and condition-specific models deri…