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popsim-consortium
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analysis2
Analysis for the second consortium paper.
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edits for DFE-alpha
#119
silastittes
opened
1 month ago
0
Dfe fixes
#118
silastittes
closed
1 month ago
1
No mutation rate for OutOfAfricaArchaicAdmixture_5R19
#117
silastittes
closed
1 month ago
5
various updates to sweep pipeline
#116
mufernando
opened
2 months ago
1
Issue with all_sites
#115
silastittes
closed
1 month ago
5
edits related to production pipeline
#114
silastittes
closed
1 month ago
4
Update production_config_PhoSin.yml
#113
silastittes
closed
3 months ago
1
updates to get PhoSin and HomSap working
#112
silastittes
closed
3 months ago
1
Vaquita genetic map snag
#111
silastittes
closed
3 months ago
9
edits to get tiny config working on talapas
#110
silastittes
closed
4 months ago
3
OutOfAfricaArchaicAdmixture_5R19 error with "none" config for DFE/annotation
#109
lntran26
closed
2 months ago
3
updated params for selection, fixed bugs, now computing stats with diploshic
#108
mufernando
closed
8 months ago
3
update pipeline for new dfe with h-s relationship
#107
chriscrsmith
closed
10 months ago
6
adjust metadata for update to stdpopsim
#106
petrelharp
closed
6 months ago
1
diploSHIC preds
#105
andrewkern
closed
1 year ago
7
Outline of work needed for sweeps analysis
#104
nspope
opened
1 year ago
0
DFE factors of 2
#103
RyanGutenkunst
closed
1 year ago
0
fix scaling of mean s for grapes
#102
lntran26
closed
1 year ago
0
diploshic simulation working
#101
andrewkern
closed
1 year ago
3
estimating DFE with all chroms
#100
chriscrsmith
closed
1 year ago
2
estimating DFE with all chroms
#99
chriscrsmith
closed
1 year ago
0
mutation rate fix
#98
stsmall
closed
1 year ago
1
proposed production-level config for humans
#97
chriscrsmith
closed
10 months ago
24
added temp decorators to summary stat workflow to clean up
#96
andrewkern
closed
1 year ago
0
small edit, for extracting dfe-alpha output
#95
chriscrsmith
closed
1 year ago
0
Msmc parallel
#94
stsmall
closed
1 year ago
3
Merge pull request #1 from popsim-consortium/main
#93
stsmall
closed
1 year ago
0
now computing stats on subwindows within focal
#92
mufernando
closed
1 year ago
11
adding summary stat workflow
#91
andrewkern
closed
1 year ago
22
Error when plotting in rule n_t_all_plot
#90
igronau
closed
1 year ago
3
Add CLR to sweeps pipeline
#89
nspope
closed
1 year ago
3
make plots of pi (and other things?) in windows along the genome from simulations
#88
petrelharp
closed
1 year ago
4
Error in when running tiny_config in rule dfe_dadi_infer_dfe
#87
igronau
closed
1 year ago
5
getting a warning about time units
#86
andrewkern
opened
1 year ago
1
Demo multpop fix
#85
stsmall
closed
1 year ago
43
snakefile ext should be smk
#84
stsmall
opened
1 year ago
1
added samples with size to dict for SLiM input deprecation warning
#83
stsmall
closed
1 year ago
7
different neutral SFS with annotation
#82
xin-huang
closed
2 months ago
0
pipeline fails with tiny_config
#81
silastittes
closed
1 year ago
3
changes to reflect dadi-cli updates
#80
chriscrsmith
closed
1 year ago
8
Sweeps simulation Snakefile
#79
mufernando
closed
1 year ago
21
update slim version
#78
andrewkern
closed
1 year ago
0
Neutral simulation and N(t) analysis
#77
lntran26
closed
1 year ago
1
Dfe mask
#76
xin-huang
closed
1 year ago
1
Lower diversity than expected when simulating tree sequence with gamma DFE
#75
lntran26
closed
1 year ago
5
liftover human recombination masks
#74
andrewkern
closed
2 months ago
1
Patch sp plot
#73
andrewkern
closed
2 years ago
3
Simulations and N(t) analysis without selection
#72
lntran26
closed
2 months ago
10
A potential bug in stairway plot N(t) analysis?
#71
lntran26
closed
2 years ago
4
add masking for `dfe.snake` workflow
#70
andrewkern
closed
2 months ago
2
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