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**Description**: open more genes that span the inversion
**Error message**: Cannot read properties of undefined (reading 'genes')
**Stack trace**:
```
TypeError: Cannot read properties of unde…
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When running this command
Rscript workflow/scripts/preprocess.R -i gnomad_extracted.csv.gz -o gnomad_extracted_prepro.csv.gz
I got this error message: Error in str_split(n_occur[n_occur$Freq > 1,…
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Hi,
The gnomad v4 is out. Any plans on updating this source?
Thanks,
Anney
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Hi Brent,
Thanks so much for SLIVAR and all of your wonderful tools!
was just wondering if there are any future plans to generate gnotation files for gnomAD v4- I understand its a huge undertaki…
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thanks for udpating the gnomAD-converter to support the gnomAD v4 data.
It would be nice to also support the gnomAD joint v4.1 VCF dataset, which has a little different in the INFO column.
In the jo…
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Hi, does it run with the latest Snakemake v.8 release, given the deprecated elements?
Also, are there other third party utils included besides CLI and the Gnomad (not already in the DESCRIPTION file)…
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These guys are really productive!
A current solution to MNV extraction:
https://github.com/macarthur-lab/gnomad_mnv
Described in:
https://www.biorxiv.org/content/biorxiv/early/2019/03/10/…
dnil updated
10 months ago
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Greetings,
Firstly, hats off to the amazing work.
I've been trying hard to download the database hg38_gnomad40_genome but every time it fails. Had tried almost 10-20 times using Google Chrome,…
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### What you did:
I looked at the GnomAD 4.1 data for variant chr2:79195912-G-T
https://gnomad.broadinstitute.org/variant/2-79195912-G-T?dataset=gnomad_r4
### What happened:
The foot of the …
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Tnscope, and perhaps other variantcallers create wierd multi-allelic insertions. These variants get gnomad frequencies per allele separated by "&" which coyote cannot handle. For these rare occasions …