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Hello,
I’m trying tor run the analysis on GeoMx data following the guide here: https://bioconductor.org/packages/3.14/workflows/vignettes/GeoMxWorkflows/inst/doc/GeomxTools_RNA-NGS_Analysis.html#
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This issue contains monthly updates to an automatically ranked list of PubMed papers as candidates for curation in the Bioregistry. Papers may be relevant in at least three ways:
(1) as a new prefix…
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The result table has gene-level statistical results. However, once the important genes are identified, the biologist would like to know which of the guide RNAs for each gene contributed the most to th…
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**First observation of cell to cell communication:**
Due to challenges such as molecular cross-talk, no more than two communication systems have been combined in a single design until now (2020).
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**Description**
As a data wrangler wrangling a project with 10X 5' V(d)J data I need to determine the correct way of defining the experiment in our spreadsheet and determine whether any a…
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The current lsf resource requirement for the "RnaSeq Cufflinks Expression" step in the RNASeq pipeline is set to mem>64 GB. While this might be pretty fool-proof and work well inside our nodes at TGI …
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Hi,
Does this work for the feature barcoding result files as well?
I got the following error message when trying with HTOs -
Error in checkAlevinInputFiles(baseDir) :
Input directory not c…
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**Description of the task:**
@hannes-ucsc pointed out that these 4 datasets have at least 1 specimen which was the sequencing input.
https://data.humancellatlas.org/explore/projects/6c040a93…
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Hello,
I have been trying to use the CITE-seq-Count script, but cannot get it to complete. It keeps getting hung up at the "Looking for a Whitelist" process. Any ideas what could be causing this? I …
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https://mp.weixin.qq.com/s/V-t3uzaISVdkDt0P7Uig8w