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Hey,
I chanced across these forks on crates.io while publishing new versions of c-ares crates; and I guess I'm just curious as to what they're for?! I only looked very briefly, but I didn't yet u…
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Hi, thank you for the great program.
Do you have any recommendations, advice, or considerations for using mHi-C with Hi-C datasets generated with the _in situ_ DNase Hi-C protocol (which uses DNa…
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I am attempting to run a genome assembly and am running into an issue of the assembly getting killed at the very end. I saw some people having similar issues due to insufficient memory, however the fi…
mabh5 updated
6 months ago
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Hi,
I successfully assembled an _A. thaliana_ genome for which I obtained two partially phased haplotypes of size 148.1 Mb (hap1) and 146.4 Mb (hap2), respectively. These files are in **.fasta** f…
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In C++17, `clamp(v, lo, hi)` uses `operator
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while hi-c jumping is not included we should not allow to use both hi-c and trio in the same run.
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Hi,
I just wanted to clarify my understanding of the haplotypes produced in Hi-C mode.
Based on the paper and the docs, my interpretation of the hap1/hap2 output files when both HiFi and Hi-C …
a-lud updated
2 years ago
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In an effort to make Hi-C matrix plotting more flexible, the following might be neat.
- [ ] Write new, general Hi-C matrix function #23
- [ ] Reshape the `geom_hictriangle` as a position function…
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Mainly for the fill values of the matrix.
`hic_obsexp`: A kind of observed over expected transformation for fill values. Would be possible to add a kind of `decay` parameter that takes a vector of …
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To add bigwig tracks, bed annotation, position annotation and whatnot. Should by default reverse the y-axis of the Hi-C layer.