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Hi,
I am testing HLA*PRG for benchmarking and I noticed your hla_nom_g file is from 3.24.0 release however, your rearragned files containing allele sequences (mostly contained in tmp2/GS_nextGen/hl…
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Thank you for developing this excellent tool!
I am also from Wuhan, China. Congratulatations on your remarkable achievements!
I encountered the following issue while following the tutorial for 'Ru…
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hisatgenotype doestn't works if HLA sequence files from the repo are substituted to new ones from IMGT-HLA database (version 3.30.0)
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['F:\\Sara\\fragpipe\\jre\\bin\\java.exe', '-jar', '-Dfile.encoding=UTF-8', '-Xmx20G', WindowsPath('F:/Sara/fragpipe/tools/MSFragger-4.1/MSFragger-4.1.jar'), '--generate_expect_functions', 'DQB2-notry…
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Hi, can SpecHLA type DRB3 and DRB5 as kourami? Thanks
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Some entries in the MHCflurry database have different labels for identical peptide-MHC complexes.
From the MHCflurry database, the *EAAGIGILTV* peptide has different measurements for the same allel…
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https://doi.org/10.1101/099358 (http://biorxiv.org/content/early/2017/01/10/099358)
> Many biological processes are governed by protein-ligand interactions. Of such is the recognition of self and n…
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Hi there,
I am trying to integrate a newer version of the IMGT Database for my analysis but there seems to be an issue at the DRB1 locus. I downloaded the database from: ftp://ftp.ebi.ac.uk/pub/data…
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Hi,
I am analyzing my SNPs from hg19 using your tool. But I got errors when I was running the bmarkergenerator (and no output).
Here is the error I got.
#///////////////////////////
Error:…
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Hello
thanks for devolving the neofox alogirhtem. I am trying to build a singularity container and then test the data sets. However, i can't figure out why the test data failed. Can you help to ch…