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Hello, I'm trying to train a HMM model from a 15 minute wav file. It crashes with following traceback:
```
Traceback (most recent call last):
File "trainer.py", line 20, in
aS.trainHMM_fr…
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### Description of the bug
Hi,
Thank you very much for developing this amazing tool.
I was trying to use funcscan on my FASTA dataset, but I encountered issues with automatically downloading the da…
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In section 4.2.1 of the paper, you said
> Therefore, we set $P_l = 0$ in all DVBx experiments. This further simplifies the inference, as the HMM becomes a Gaussian mixture model (GMM) (see Eq. 1)
…
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**Describe the bug**
A clear and concise description of what the bug is.
i was to rerun the HMM code by use own xtc and tpr files, but it report the error as follow:
![image](https://user-images.…
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Hi,
Recently, I have read your article "Concerted expansion and contraction of immune receptor gene repertoires in plant
genomes" in Nature Plant. It's really a brilliant research!
I noticed …
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Hidden Markov Models are quite common in time series analysis. Since they involve discrete variables, HMC is not always appropriate, although we can still apply HMC for continuous parameters of an HMM…
yebai updated
4 months ago
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Hi,
I am trying to use this package to train an HMM model using genetic sequences. Everything is working fine until I try to bake the model using krogh.profileHMM per the README as follows:
mode…
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This error came up on CITGM: https://ci.nodejs.org/view/Node.js-citgm/job/citgm-smoker/1773/nodes=debian8-64/testReport/junit/(root)/citgm/clinic_v4_0_0/ (Ctrl+F for "not ok")
It seems flakey: ther…
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I'd like to train a model on some genomes I have available locally. I have my gene models in GFF format so I converted to GTF with `gffread`, extracted the longest isoform, then tried creating `tfrec…