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I want to use the util.io.load() function to load a .pkl (pickled) file. I think that in Python3 however we need the 'wb' or 'rb' option to write (dump) and read (load) a pickle file respectively. I u…
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Presently, NEURON and PySCeS cannot be used together a single Python memory space, likely due to their shared dependency on SUNDIALS.
The Dockerfile below illustrates the problem. Building this res…
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- [x] Better introduction to the repository as a whole, its purpose, what it is trying to accomplish
- [ ] Instructions on how to run the vclamp.py and explain its significance to the Boyle/ Cohen pap…
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1. **Lab Name**: Neurophysiology Virtual Lab
2. **List of Experiments and Repositories**:
a. Voltage Clamp Technique
https://virtual-labs.github.io/exp-voltage-clamp-au
v1.0.0
b. Simple …
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Automated repository crawler for the documentation would be lacking several geppetto libraries. This issue is to add a basic .openworm.yml to libraries in the geppetto project that indicates the relat…
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I have proved that iterated function systems are effectively compositionally universal.
The are two problems: the parameter space is too big to efficiently use, and the compositions are distributed…
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hello! I'm building a single compartment HH model using BMTK. When I set the model_type to 'single_compartment' during the build process, I receive the following error message: 'Exception: Unrecognize…
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As requested by @gidili, a list of some NML2 models with just a single cell and a current input (leading to some reasonable behaviour, and ideally executable on OSB), which can be used for various tes…
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There is now a working version of spatial neurons, with weave. Now it seems that the bottleneck in the Hodgkin-Huxley example is state updates. It reminds me that in Neuron, there is an intensive use …