openworm muscle_model issues

openworm / muscle_model

Model of C elegans body wall muscle based on Boyle & Cohen 2008

http://www.opensourcebrain.org/projects/muscle_model

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issues

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Updated GHA test scripts

#68 pgleeson closed 1 month ago
0
Regenerated summary

#67 pgleeson closed 8 months ago
0
Master->dev

#66 pgleeson closed 1 year ago
0
Add ci

#65 pgleeson closed 2 years ago
0
SciUnit test to reproduce additional muscle patch clamp data in the muscle model

#64 slarson opened 7 years ago
7
Add to the readme to create a well cited and reasoned case for the ideal set of ion channels that should be in the muscle model

#63 slarson opened 7 years ago
8
[WIP] Add test for vclamp.m

#62 souravsingh opened 7 years ago
4
Muscle Model Explorer - Error while loading channel files

#61 shah-n closed 7 years ago
2
Shell script tester

#60 pgleeson closed 8 years ago
1
Shell script tester

#59 brijeshmodi12 closed 8 years ago
0
Update SingleCompMuscle.cell.nml

#58 adrianq closed 8 years ago
0
Updated C Code

#57 RobbySimpson closed 8 years ago
0
Using setup.py to install dependencies

#56 pgleeson closed 8 years ago
0
Add setup.py to install most dependencies

#55 slarson closed 8 years ago
2
correcting q0 in trap funct

#54 borismarin closed 8 years ago
3
Delete or archive unused branches

#53 gsarma closed 8 years ago
1
Write PyTest tests for basic command line runs

#52 gsarma closed 8 years ago
12
Create tests to catch performance regressions in specific functions

#51 gsarma opened 8 years ago
0
Check for performance regressions in testing suite

#50 gsarma opened 8 years ago
1
The same conductance for different channels in nml files

#49 VahidGh closed 8 years ago
6
Created folder structure and README for tests

#48 gsarma closed 8 years ago
3
Replace jnml in scripts with pynml?

#47 travs closed 8 years ago
2
Update README.md

#46 gsarma closed 9 years ago
1
Add jneuroML to documentation here

#45 travs closed 9 years ago
3
Integrate the test in the test suite being run on TravisCI

#44 travs opened 9 years ago
0
Turn the error-generating script into a SciUnit test

#43 travs opened 9 years ago
0
Write a script that generates an overlaid image of the simulated and digitized data

#42 travs opened 9 years ago
1
Write a script that takes the digitized figure and the simulation output and calculates the error/difference

#41 travs opened 9 years ago
0
Digitize the figure mentioned in #31

#40 travs closed 9 years ago
7
Document muscle_model testing framework

#39 travs opened 9 years ago
0
Write SciUnit validation tests for muscle_model

#38 travs opened 9 years ago
10
Write Pytest tests for muscle_model

#37 travs closed 8 years ago
1
Write doctests for muscle_model

#36 travs opened 9 years ago
16
Simpler travis script

#35 pgleeson closed 9 years ago
0
Replacing NML2ChannelAnalyse.py from the BBP showcase with pyNeuroML

#34 VahidGh closed 9 years ago
2
Draft workflow outline for validation tests

#33 travs opened 9 years ago
0
Improve Geppetto version of muscle model

#32 slarson opened 9 years ago
3
Define parameters for simulated experiment using jNeuroML on the command line, based on the methods that went into the figure

#31 slarson opened 9 years ago
19
Create unit test that verifies correct I/V curve for ca_boyle NML2 channel

#30 slarson opened 9 years ago
13
Create setup.py to install dependencies to run NeuroML2 model

#29 slarson closed 8 years ago
7
Print out values from python / matlab implementations and compare with values from NeuroML2

#28 slarson opened 9 years ago
8
Optional OPENWORM_HOME variable for those that don't want to use the ~/git path.

#27 rgerkin closed 9 years ago
1
Screenshot for section 2.1 in README

#26 rgerkin closed 9 years ago
2
Non-reliance on ~/git

#25 rgerkin closed 9 years ago
5
Section on running ion channel simulations

#24 rayner closed 9 years ago
0
Readme updates

#23 slarson closed 9 years ago
0
Add a Gitter chat badge to README.md

#22 gitter-badger closed 9 years ago
0
Plotting I-V curves

#21 VahidGh closed 9 years ago
0
generate I-V plots for ion channels

#20 VahidGh closed 9 years ago
12
Create iv_all.py

#19 VahidGh closed 9 years ago
3