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BN.1 seems to have acquired S:494P in this lineage, all of these 3 sequences also share C28585T so look like they are monophyletic, but one should check Usher:
hCoV-19/Denmark/DCGC-581901/2022|EPI_…
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Here i want to propose another sublineage of BA.5.2 with S: K444R
Defining mutations:
BA.5.2 + 12310A + orf1b:1050N + 27513T +27012T + S:444R
Tree
![Schermata 2022-09-04 alle 10 12 29](https:/…
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Lineages.csv containt 7 XU samples :
> Japan/IC-4679/2022,XU
> India/RJ-SMS-ICMR-INSACOG-TS-11049/2022,XU
> India/RJ-SMS-ICMR-INSACOG-TS-9433/2022,XU
> India/RJ-SMS-ICMR-INSACOG-TS-9434/2022,XU
…
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Noticed this lineage as it was growing in Belgium and had an interesting mutation: BA.2 S:S371F has mutated further to S:371F (C22674 from T->A).
It seems most common in India, where it's been dete…
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Proposal for a sublineage of BA.2.75
Earliest sequences: 2022-07-12 (India and Singapore)
Countries detected: India (2-4 from West Bengal, 2 from Telangana), Singapore (2), USA (1)
Mutations in a…
silcn updated
2 years ago
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@corneliusroemer and @c19850727 noticed an uptick in BA.2 sequences carrying S:L212S some time ago.
After monitoring its growth since , today i digged a bit more in it finding that this mutation seem…
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It's plausible that BA.2 + S:K417T has a growth advantage. So I went and checked out all the global lineages. There are multiple, which again points to growth advantage.
This is a lineage that appe…
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Hi,
Thanks for creating and maintaining this great interface! Is it possible to include a flatfile(csv/tsv) dump of all the sequences being deposited
which at the bare minimum as the following fie…
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Proposal for a sublineage of BA.2
Earliest sequence: 2022-06-02 (India)
Countries detected: India (5 seq, from 3 states)
Defining mutations:
S:K147E, W152R, F157L, I210V, G257S, D339H (mutated f…
silcn updated
2 years ago
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This is via @mg14 and I haven't had a chance to investigate it in great detail yet. He points out that on Cov2Tree we report a S:F157S on a branch ancestral to AY.4.2 (and propagate this to its childr…