-
Because of problems that emerged with the "small_network" experiments (NetRAX inferring a 0-reticulation network that has better loglikelihood than the "true" simulated network on the simulated MSA da…
-
From Dirk:
==
Concerning the OpenChain Curriculum (v1-1)
Page 23 "Check Your Understanding (of Chapter 2)" => Notices
Maybe I am wrong but I just wondered, if
"License reciprocity me…
-
How does the number of partitions influence the number of inferred reticulations?
It is obvious that with LikelihoodType.BEST, network inference on an unpartitioned MSA will always lead to a tree.
…
-
I know there exist other programs that can do the conversions. However, it can get very time-consuming to set up an analysis pipeline where each program requires another file format. :-(
Maybe we cou…
-
Hi,
is there a specific reason why you use the term _memoization_ in the paper, instead of _lookup table_. It could be confusing for the target audience of the paper which, presumably, is made of bioi…
-
Now that the columns in the results CSV are fixed (see https://github.com/lutteropp/NetRAX/issues/14), let's list which plots we need. Here are some that I believe make sense to have:
- Use the dat…
-
Turns out the order of {reticulationOpt, brlenOpt, modelOpt}, and when and how often to call it during the search is affecting which moves are getting accepted.
-
We need an additional experiment that investigates how the brlen-linkage (especially scaled vs. unlinked) affects the NetRAX inference results.
-
(Following conversation with @kaplun and @jacquerie to formalize the requirements.)
An important part of the work of cataloguers is adding affiliation identifiers (`ICN`s) for authors based on the …
-
### 1. Who you are
My name is Mark Schutera I am a doctoral researcher and adjunct lecturer with Karlsruhe Institute of Technology / Institute for Automation and Applied Informatics.
### 2. A few …