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Hi, Thanks always for the nice tool!
I have clustered a large sequence set with `mmseqs linclust `, and now I want to add some sequences and update the clustering result with `mmseqs clusterupdate`.
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## Expected Behavior
`mmseqs easy-linclust` executes with flag `--min-seq-id`
## Current Behavior
`mmseqs easy-linclust` throws error `Error in argument --min-seq-id` when given flag `--min-seq-i…
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Hello! I am hoping to use linclust to cluster several million proteins instead of cd-hit due to its speed. I have trialled all the combinations of --cov-mode, --alignment-mode, --cluster-mode and --se…
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The running time of Linculst in the threshold between 50% to 90% is normally the same. But why does Linclust‘s running time in the threshold 90% to 100% range gradually increase? The run time at 100% …
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## Expected Behavior
Hi! I'm clustering ~60000 nucleotide sequences, each 250bp to 500bp.
Here is the command I use
mmseqs cluster shrimpDB shrimp.clu97 tmp97 --cluster-mode 0 -s 7.5 --min-seq-id…
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When trying to build an HHBlits database from linclust output of 250mio clusters over 0.5bn sequences, `cstranslate_mpi` runs for a few days and does not produce an output
## Your Environment
* cs…
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## Expected Behavior
Cluster Uniref90 after it has been translated into a 5-letter alphabet. Cluster it to 90% identity and 80% overlap (similar to how Uniref90 was initially generated).
## Current …
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Summary: Running `easy-linclust` on [SRC](http://gwdu111.gwdg.de/~compbiol/plass/2018_08/) got stuck after the first call of `rescorediagonal`. No progress and no printed information for ~12h. Not sur…
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`clusterupdate` only generates one main database file output (eg., `clusters_db`), regardless of `--threads`, while `cluster` and `linclust` generate one file per thread (eg., `--threads=4` generates …
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## Expected Behavior
Cluster nucleotide genome sequences (e.g., wgs records, contigs, scaffolds, complete genomes) in a few hours using `easy-linclust`
## Current Behavior
Running `easy-lincl…