-
Hello,All
i am trying to use Plant-LncRNA-pipline to identify lncRNAs in plants. But when i run (grep -Fwf final_lncRNA_results.txt candidate_transcript.gtf > lncRNA.gtf) this command, there is no r…
-
Indeed, this is not an issue with RNAcentral, rather I need help with some intuition please
We have exosome-sequensing (from plasma). In raw read counts file, I see 72650 gene names
This is hoe …
-
Hi Yang,
Thank you for this great tool! We are interested in predicting the subcellular localization for thousands of PacBio reads targeting lncRNAs. I tried to use http://www.csbio.sjtu.edu.cn/bio…
-
Hey, I would like to use predict_GPU.py to identify lncRNAs from putative ncRNAs of a transcriptome (~100k putative ncRNAs, >300bp). I didn't understand how to generate a file like file_format_GPU for…
-
Hi
I only have a list of lncRNAs and not expression level
It is possible to plot their up/down expression in a list of pathways like this figure for miRNAs?
![miRna pathways heatmap](https://…
-
When I use it to build ceRNA network,I notice the internal dataset "pcTarget" and "lncTarget" of this package.
QUESTION:
According to your published article,you use 3 data sources including StarBa…
-
We generated a Dam fusion with RNA Polymerase III. (Dam::RNAPol3)
This was for looking tRNA and other lncRNAs occupancy, but most of those elements have a relative short sequence.
Do you think this …
-
We are trying to use genotyping arrays (Axiom) to get VCFs for demuxlet.
Are there any recommended steps / tutorials for SNP cleaning and filtering to optimise the demuxlet yield?
We are curren…
-
Dear Brian
I have a problem about mapping and aligning transcripts to the genome using PASA. Can the transcript here be a non-coding transcript? My purpose is to verify the GT-AG rule for non-coding …
-
Hello,
I am working with long non-coding rnas of 9 different species and would like to determine how conserved they are. To do this, I did a reciprocal blastn of all possible species combinations …