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Dear Dr. Hajk-Georg Drost
Recently, I used one of your programs named "LTRpred".
I keep getting this error in the Join solo LTR Copy Number Estimation table after Finished LTR CNV estimation…
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When using HiTE, I encountered KeyError using different genomes. Hope to get your answer.
Script：
#!/bin/bash
source ~/anaconda3/bin/activate HiTE
python /work/home/qljgroup02/01.chinese/01.wg/s…
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Hi Evan
I was wondering if you could explain me the LTR age output.
How is it calculate the age in each LTR family? The summary file have these columns:
Superfamily Family Family_size ElementID D…
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## Problem description
While using LTRharvest this error pops up：
```
Assertion failed: (refrng.start leftLTR_5), function gt_removeoverlapswithlowersimilarity, file src/ltr/ltrharvest_stream.c, …
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Dear developers,
I have succed in running HiTE pipeline, but the statistics of the results (HiTE.tbl) reports results for only the LTR repetitions and the simple repeats. The log file does not highl…
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```
2024-08-14 20:37:50,275 - main.py[line:406] - INFO: Start step0: Structural Based LTR Searching
2024-08-14 20:37:50,275 - main.py[line:419] - INFO: cd /home/pxxiao/tools/HiTE/HiTE/./module && py…
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An error occurred when running the sif file. --annotate 1 --plant 1 --intact_anno 1
```
2024-07-24 20:57:48,357 - main.py[line:316] - INFO:
--------------------------------------------------------…
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Hi,
How may I fix this run error for executing the _S. cerevisiae_ test case, using your `LTRpred`?
BTW, the 1st test with Hsapiens_ChrY_ltrpred input completed without any error or warning me…
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Hello, I am using HiTE to annotate transposons. However, I did not provide a database such as repbase. I found that the values of the matching repeat columns in the results seemed to be randomly gener…
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Hello, thank you for such a great software. However, I encountered some issues during usage. As noted, no elements were annotated in the "DNA transposons" category, which differs from the RepeatMasker…