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hi pyAscore team.
I have a problem that my mass spectrometry data had two modifications to K, and when I submitted the code, the following example spectral data data seemed to be wrong. , and two K m…
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The following fields and entries do not comply to the latest Record Format and should be changed in the data for harmonisation.
**Those tags are wrongly used or the terms changed during the last ye…
tsufz updated
4 years ago
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Terms to add
- [ ] Exposomics (topic)
- [ ] peak table (-> expression data)
- [x] MSP (-> mass spectrometry data format) https://github.com/edamontology/edamontology/issues/864
- [ ] Parquet for…
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Include Data source -> 'Experiment' -> 'Experiment type' + 'Experiment technique'.
@brissebrat Can you include the list of experiment techniques from the LADP database?
These should be include…
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https://bioportal.bioontology.org/ontologies/MS?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMS_1000231
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I'd love to read more about how this tool is being used, but I'm blocked from accessing the paper describing it:
Colby, S.M., Chang, C.H., Bade, J.L., Nunez, J.R., Blumer, M.R., Orton, D.J., Bloods…
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Current specs can deal with single CE or ramped CE:
AC$MASS_SPECTROMETRY: COLLISION_ENERGY 20 kV
AC$MASS_SPECTROMETRY: COLLISION_ENERGY Ramp 10-50 kV
Options for broadband (MSe, DIA ...)
- define new…
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Hi all,
I made a pull request with three exemplary annotations for MSI data to start a discussion: https://github.com/bigbio/proteomics-metadata-standard/pull/450
Here are some thoughts about t…
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MS (mass spectrometry ontology) is listed on the Ontobee homepage, but the links to the terms do not work when clicked.
https://ontobee.org/ontology/MS
https://ontobee.org/ontology/MS?iri=http://pur…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/CooperstoneLab/MS2extract
Confirm the following b…