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Hi Antonio,
I had a question about calibrated aggregated classification scores output by geNomad. If I run a metagenome assembly through genomad, would it be appropriate to use the calibrated aggre…
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Dear OPERA-MS creators,
Thanks for the great tool!
I am attempting to assemble a **very** large and complex metagenome (~5e9 150 bp PE reads or ~ 8e11 basepairs short reads) with about 16 gbs …
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All: I am rather new to this group & would like to introduce open-source applications that I frequently use in our metagenome/metaproteome workflows (primarily on HPC systems):
00. Omega2: https…
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Hi MGnify team,
Thanks a lot for your work!!!
But I still got some problem during my data processing. Actually, I only need a mapping file that summarizes sample_infos and assembly_ids.
Speci…
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### Description of bug
We performed an hybrid assembly using metaspades (ONT + SR), we had really huge coverage. Nonetheless, one of the final we discovered that there were 5 minority SNPs that were …
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Hi,
Is there a way of getting BandageNG to output connected components as separate assembly graphs? I work with metagenomes and it would be extremely useful to be able to do this and then work on t…
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Hi,
I tried to run eggnog-mapper/2.1.6
`emapper.py --cpu 0 -m mmseqs --itype metagenome --mmseqs_db ~/ku_00039/people/dinghe/eggNOG_mapperDB/mmseqs -i scaffolds.fasta -o eggNOG_mapper_out`
And …
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I've been developing a metagenomic/metatranscriptomics software suite called VEBA (https://github.com/jolespin/veba) that natively handles eukaryotic binning of metagenome-assembled genomes and exon-a…
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This was on my mind back to this point in time. But I never had the bandwidth to fit it in amongst the other things in my life.
Needs triage and revisit scheduled.
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Currently shows usage for a custom client, which doesn't translate to `curl` / `requests` / etc.
Correct query for multiple files with `requests`:
```
In [15]: r = requests.get('https://ci.kbase.…