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[Would the Bifrost (I believe it is actually pronounced very similarly to beef roast) colored deBruijn graph structure](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02135-8) pro…
nmb85 updated
3 years ago
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It took 3hours to generate 10GB NGS data (19GB total) on my laptop (4 cores)
- How many samples do we require to make it statistically correct?
- We are interested in host-contamination impa…
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We plan to expand our catalogs of tutorials for whole-genome microbiome data analysis.
Here are some ideas we will implement:
- Expand the introduction slide deck to add more overview of the diffe…
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I assume that npScarf is designed for Single species bacteria. Anyhow, I want to check how it works for my bacteria in metagenomics sample. With Illumina MISEQ data, I did the assembly with SPADES …
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When running the binning module using in the following way:
`
metawrap binning --metabat2 --maxbin2 --concoct -t 40 -m 128 -l 1000 -a $infile -o $outdir $fwd $rvs`
the runs stops after finishing …
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Hi Oskar
I am facing an issue with running binny at PBS like server.
After it finishes 8/8 jobs, it's complaining about establishing connestion to network:
"Failed to establish a new connectio…
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Hello,
When __indexing a multifasta__ file, both __nvBWT and nvSetBWT__ work, but they __treat only the first sequence__ in my multifasta file.
(nvBowtie works also, treating this only first refer…
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## The need
When manually binning MAGs, I often find myself checking the GTDB database to see whether the size of the MAG I've selected is within a plausible range of other members in that genus (g…
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I want to extract euk genes/proteins from metagenomics data. I want to build a gene/protein catalog for euk genes.
Seems that metaeuk is a reference guided approach ( based on mmseq2) and Plass is a …
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Hi, very cool repo!
I had a small question regarding the last few bullet points in the readme workflow, as I have been thinking of implementing something similar to address the fact that most MAGs ge…