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It took 3hours to generate 10GB NGS data (19GB total) on my laptop (4 cores)
- How many samples do we require to make it statistically correct?
- We are interested in host-contamination impa…
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Modifying ComBEE session on binning:
- Motivations, background, what can you learn
- Terminology
- General workflow to keep up through the workshop
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## The need
When manually binning MAGs, I often find myself checking the GTDB database to see whether the size of the MAG I've selected is within a plausible range of other members in that genus (g…
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Hi Oskar
I am facing an issue with running binny at PBS like server.
After it finishes 8/8 jobs, it's complaining about establishing connestion to network:
"Failed to establish a new connectio…
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Hi,
we have sequenced marine samples using the Nanopore sequencers and I am currently testing methods to assemble the resulting sequences. I just stumbled upon your article and would be very intere…
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Hello everyone,
I've used your tool in different metagenomics project and now, as suggested by my supervisor in a WGA, I've used as a decontamination tool after scaffolding.
Following, I've tri…
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Reply with learning objectives (and challenges to test them, if possible).
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Hi,
Thanks for the cool tool!
I ran `metawrap` on 5 metagenome samples with the following commands. The version of `metawrap` is 1.2.1.
```shell
# kraken
metawrap kraken -o $WORKDIR/metawr…
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# Critical Assesment of Metagenome Interpretation (CAMI)
CAMI is an open challenge for meta-omic's programs where the developers of said programs test out their programs on multiple different dataset…
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**### when run the binning module, it successfully finished. But there is an error in the running. does it matters? the errors is below. thanks!**
```
##### …