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Hello!
I have used this program to extract the DNA methylation levels from data and have bam outputs. I am trying to analyze where methylation is occurring on the genome, but the annotations of the…
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Hi,
I am trying to compare DNA methylation over set of genomic regions through average profile and heatmap. Is there any control to keep the y-axis same for top annotation in the enrichedheatmap fu…
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Hello,
I have some methlyation EPICv2 data that I am trying to perform differential methylation regional (DMR) analysis on, and am having some trouble using the customized packages (specifically t…
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**Is your feature request related to a problem? Please describe.**
This is the list of Categories on Dockstore, though manual curation is slow:
```
COVID-19
Genomics Toolsets
Alignment
Assembly
Asso…
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The estimateCellCounts2() function is consistently giving me the warning message: ```In asMethod(object) : NAs introduced by coercion```
I have included the workflow below:
```> library(FlowSorted…
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Hi community,
We are interesting using minfi to analyze mouse 285k methylation data. Is there any chance that Minfi can support this set of annotation, or any alternative suggestion is welcome. Tha…
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Hi there,
I have tried MEAL for the analysis and integration of EPIC data and RNAseq but I have encountered an issue I am not able to sort it out.
I analyzed the methylation data using `RnBeads…
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### Description of feature
At the moment everything is published, including intermediary files. We might have to think of more long-term solutions for some of these, but a fix in the near future is n…
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mRNA methylation is now gone, but it seems odd that we have the other methylation terms.
@pgaudet Should this branch have "do not annotate" added, pending obsoletion?
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we should look at this...
| MGA repository: a curated data resource for ChIP-seq and other genome annotated data.
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| Dréos R, Ambrosini G, Groux R, Périer RC, Bucher P.
| Nucleic …