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Hi,
I have been receiving the following error while executing miRDP2-v1.1.4_pipeline.bash even after formatting the input fasta files:
Use of uninitialized value $id in hash element at bin/scripts…
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Author Name: **Jan Teichmann** (Jan Teichmann)
Original Redmine Issue: 3087, https://redmine.open-bio.org/issues/3087
Original Date: 2010-05-28
Original Assignee: Bioperl Guts
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hi there,
I’m…
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Kia ora Ben,
I just noticed with the `shuffler -m ` option the output sequences are all shorter than the input sequence by 1 nucleotide for `-k` values `>1`. Is that an expected feature or a genuin…
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Original Author: Eli Fisker
Original Link: https://getsatisfaction.com/eternagame/topics/-strategy-market-switch-amount-of-repeat-bases
Intro
There seemingly is a difference in amount of repeats, be…
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Original Author: Eli Fisker
Original Link: https://getsatisfaction.com/eternagame/topics/-strategy-market-switch-base-pair-difference-between-states-for-ms2-fmn-switches
Intro
Another thing that mat…
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* "Do we need to define what is a miRNA before jump into naming?"
**Deadline to participate: May,01.**
**Suggested answers:** a) we should do it before moving forward, b) we can move forward. Pl…
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Hi,
We recently detected that gff output form mirtop stats gives unexpected results. We got two entries for canonical (variant=NA for many miRNAs instead of a single one (one of the two in fact is …
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Hi,
I'm trying to run hyb on the example data using Mac OSX on a 2018 MacBook Air.
I've installed all dependencies besides flexbar 2.5 using Conda (edit: flexbar 2.5 was installed manually). My …
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I ran the QC and alignment modules on my own data with hg28. My original reads are 75bp single-end. After QC, I get most (>90%) of the reads with length >60 bp.
```
#The length distribution of the…
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In order to use VEP, I made an AUGUSTUS GFF annotation file. Here you can see the GFF structure for the first gene:
```
SuperScaffold AUGUSTUS gene 1 5061 0.02 - . …
eprdz updated
7 months ago