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---
Author Name: **Jan Teichmann** (Jan Teichmann)
Original Redmine Issue: 3087, https://redmine.open-bio.org/issues/3087
Original Date: 2010-05-28
Original Assignee: Bioperl Guts
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hi there,
I’m…
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Please, describe below the problem you think we face in the miRNA/isomiR naming.
Try to summarize it in 200 words. The current discussions are here:
* isomirs : https://github.com/miRTop/incubat…
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Original Author: Eli Fisker
Original Link: https://getsatisfaction.com/eternagame/topics/-strategy-market-switch-obligatory-switching-base-pairs-in-ms2-fmn-switches
Intro
As a rule of thumb the obli…
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Thanks for developing MOSAIK, I tried on a human dataset and get a Segmentation fault. Any hints?
Thank you!
## /home/snow/bin/MOSAIK/bin/MosaikAligner -in LID115260_MERGE1.mkb -out ../bamfiles/LID1…
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Kia ora Ben,
I just noticed with the `shuffler -m ` option the output sequences are all shorter than the input sequence by 1 nucleotide for `-k` values `>1`. Is that an expected feature or a genuin…
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* "Do we need to define what is a miRNA before jump into naming?"
**Deadline to participate: May,01.**
**Suggested answers:** a) we should do it before moving forward, b) we can move forward. Pl…
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Hi,
We recently detected that gff output form mirtop stats gives unexpected results. We got two entries for canonical (variant=NA for many miRNAs instead of a single one (one of the two in fact is …
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read_json almost never work for me. Here is for instance a json that is totally valid but breaks read_json
```
{
"id" : "GSM1698568",
"gse" : [
"GSE69360"
],
"title" : "Biochain_Adu…
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I ran the QC and alignment modules on my own data with hg28. My original reads are 75bp single-end. After QC, I get most (>90%) of the reads with length >60 bp.
```
#The length distribution of the…
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Hi,
I'm trying to run hyb on the example data using Mac OSX on a 2018 MacBook Air.
I've installed all dependencies besides flexbar 2.5 using Conda (edit: flexbar 2.5 was installed manually). My …