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**Describe the bug**
Cropping an image before localization analysis hits a bug
```
Traceback (most recent call last):
File "c:\userfiles\davis_perez\code\python-microscopy\PYME\DSView\modules\…
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**Describe the bug**
```
DEBUG:root:we have unpublished frames - push them
DEBUG:PYME.IO.clusterIO:could not find file Bergamot/2020_12_22/EMC0606_secondaryabcomparison/next_day/B2/000/23_12_seri…
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## *Repository Creation Request*
Use this to get your experiment repository created or updated on GitHub under Virtual Labs organization.
1. #### Coordinating Institute: IIT Kanpur
2. #### Appr…
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**Note: Discussion on naming - Folders vs, Containers vs, something else is on-going. “Containers” is used in this document without prejudice.**
From Michael Porter 27/11/2015
**Context:** Microscop…
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[Neuronal morphometry directly from bitmap images](https://www.nature.com/articles/nmeth.3125)
- Published: 29 September 2014
- Tiago A Ferreira, Arne V Blackman, Julia Oyrer, Sriram Jayabal, Andrew…
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**Is your feature request related to a problem? Please describe.**
As discussed yesterday, sometimes it can be nice to have _a_ result file even if it is null, e.g. #1009. Wanted to crack open an iss…
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Is this HiP-CT technique [in use at the ESRF](https://www.esrf.fr/home/UsersAndScience/Experiments/StructMaterials/BM18.html) included in one of the existing terms? Like the PaNET01152 (propagation ph…
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**AIMS**
- Reconstruct images from 2D patches
- Run inference on microscopy data
**Preliminary questions**
- Deal with patch overlap for inference
**UPDATE**
- The loading of microscopy data…
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Running list, add to it as we think of stuff
- [ ] Planned pages we didn't get to
- [ ] [Setting up sample acquisition](https://github.com/broadinstitute/MicroscopyForBeginnersReferenceGuide/blo…
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**Background**
* our main product we have is called ZEN, which is a big SW platform to control microscopy and do image & data analysis
* it can be installed using a dedicated installer called ZMI …