-
Hi,
I'm getting these errors when I try to use `mmseqs`:
```
Running mmseqs all-versus-all
-----------------------------
Using 28 thread(s)
2021-06-25 08:06:02 : This may take some time....
…
-
Hi,
I have met with another ignoring error, here is the log:
0.982908 k-mers per position
14994 DB matches per sequence
8 overflows
0 queries produce too many hits (truncated result)
58 sequen…
-
Hi. I am trying to follow the documentation to install and train the model.
I have successfully installed everything and have run the following commands so far, also successfully:
bash scripts/down…
-
# **OrthoFinder version 2.5.4 installed by conda:**
```
$ orthofinder -f rep_type_out_more_genomes_faa -M msa -S mmseqs -a 10 -o rep_type_out_more_genomes_faa_orthofinder_test
OrthoFinder versi…
-
## Expected Behavior
Expect search return identity value for query sequences
## Current Behavior
No values (identity) has been returned.
## Steps to Reproduce (for bugs)
Data can be found h…
-
There is clear instructions on running Alphafold on its original sequence alignment protocol but that on mmseqs is unclear. Is mmseqs supported for both monomeric and multimeric structures?
If so, …
-
Hi,
I am having problems installing the DRAM database. I get the same error on two different servers. I installed DRAM following the instructions:
git clone https://github.com/WrightonLabCSU/DRA…
-
## Expected Behavior
produce an a3m file for a query sequence on a custom sequence database
## Current Behavior
Got an error message
```
Invalid database read for database data file=CustomSeqDB…
-
## Expected Behavior
No error.
## Current Behavior
```
Not enough GFF files are provided. Some results might be omitted
tmpFolder/15806226240676100088/createsetdb.sh: line 130: 9468 Segmentati…
-
Hi,
Thanks for making this great tool available. When running on MacOS, I get an error in the following line:
```
run_process(['mmseqs', 'createindex', output_loc, tmp_dir, '--threads', str(th…