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Faster motion correction would be helpful when analyzing very large data sets. Some possible approaches include:
- spatial down-sampling
- algorithm changes
- profiling and optimization of implementat…
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https://github.com/NeurodataWithoutBorders/nwb-schema/blob/19c4bbb36effb1454253072f70ebf2c83f2ea095/core/nwb.ophys.yaml#L335-L360
- xy translation is required but modern motion correction is often …
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When I apply a high pass spatial filter I can't do motion correction afterwards. The script just hangs during motion correction without providing any feedback, error or progress bar. When I substitute…
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Hello,
Thank you for your efforts to collect the data and construct the API. I have looked in the Jupyter example on how to import different datasets. My question is:
Do you have a function in y…
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- all `sima.motion.MotionEstimationStrategy` choices seem to consider translation only -- tho this is often the most significant motion, there are also detectable rotation (and shear, tho less so) com…
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**when I type : shifts = list_shift(ch1)** (photo attached)
IndexError Traceback (most recent call last)
~/HumsaTraces/cellsync/registration.py in list_shift(img…
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I implemented pixelshift in RawTherapee in [pixelshift branch](https://github.com/Beep6581/RawTherapee/tree/pixelshift) and tried 3 methods.
1. method is the one from dcrawps
2. method uses a 3x3 gr…
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Labelers reported that the ROI labeling app is their best way to spot motion correction problems, and they like the Sagemaker app for assessing.
- [x] Create bare minimum Sagemaker Labeling Job to la…
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The current visualization in the pipeline is not very helpful to validate if motion correction worked