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Hi,
I'm currently using Brainways to align my mouse section to the reference atlas and I'm hoping to export the transformed image and the atlas with the annotated brain regions to then use both for…
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It's a wonderful work, I have found all datasets but mouse brain dataset on https://figshare.com/articles/dataset/Benchmarking_atlas-level_data_integration_in_single-cell_genomics_-_integration_task_d…
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### Data Owner Name
Allen Institute
### Data Owner Country/Region
Armenia
### Data Owner Industry
Life Science / Healthcare
### Website
https://registry.opendata.aws/?search=manag…
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PMID: 29794128
Species: Mouse
Tissue: Kidney
Paper title: A Single-Cell Transcriptome Atlas of the Mouse Glomerulus
Paper link: https://pubmed.ncbi.nlm.nih.gov/29794128/
GEO link: https://www.ncb…
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- Link to publication: https://doi.org/10.1101/2021.12.12.469460
- Title of publication: Tabula Microcebus: A transcriptomic cell atlas of mouse lemur, an emerging primate model organism
- First …
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### What format would you like to see added to NeuroConv?
SHARP-Track is a MATLAB user interface to explore the Allen Mouse Brain Atlas, register asymmetric slice images to the atlas using manual inp…
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Hi,
This data
`associations.01112014: processed cell type and gene association data downloaded from EBI Expression Atlas (http://www.ebi.ac.uk/gxa/)
`
from the E16.5.Rda example data set ca…
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**What's the problem this feature will solve?**
Annotation saved using CellLocator do not include reference to the associated atlas. Without the context, interpreting the saved annotation is not po…
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Move to bundles inner entity since the scope of the aggregate is the bundle not the entire project.
Reproduction:
- Aggregate dates included in `projects` inner entity from `projects` endpoint (g…
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Is there a way to extract/subset specific values from the generic list-of-list (not HCA data) that meet a particular condition?