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As discussed at the HUPO Busan Bioinformatics Hub, it would be great to compile a list of all the available mzML (and mzMLb?) parsers for different programming languages.
Off the top of my head and…
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I saw that BatMass was thinking of being able to support direct reading of Thermo .raw files. Is this still true? If so, would it be possible to achieve this reasonably quickly/stably by calling the a…
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I use xcms3 usually via a Jupyter notebook interface using R 3.4.1. All components are installed with conda, from either conda-forge or bioconductor channels.
### Code and error message
On my lap…
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We should be able to retain all CV params and their values found in mzML files when files are imported to MSDK and then exported again to mzML.
Example:
```
```
This is not a high-priority issue, b…
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Hi,
I'd like to ask if there's currently a way to write out a `Spectra` S4 object, probably initially read as `.mzML` or `.mzXML`, as `.h5`? There doesn't seem to be this capability from what I'm …
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**Describe the bug**
Hi, no specific bug... I just can't get AlphaPept to run! I have a collection of mzML files from PXD003881 converted using ThermoRawFileParser that I am trying to analyze with …
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This is mostly necessary to support XML-based file formats like some of the Agilent MassHunter formats, mzML, etc.
There are a couple existing streaming XML Rust parsers that we could possibly wrap…
bovee updated
2 years ago
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I just used the demo code to try to see if this peak evaluation function can be implemented in my environment, but I encountered a warning that `makeXcmsObjFlat `cannot be found, and I have no way to …
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When only one scan is selected by [detectInfusionScans](https://aberhrml.github.io/binneR/reference/detectInfusionScans.html) (which can happen if `thres` value is too high), BinneR will crash during …
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I might be potentially be putting my foot in my mouth for proposing this so let me know if that is the case, but have you considered adding sqlite support, either based on previous work such as the no…