MetaboHUB-MetaToul-FluxoMet RTMet issues

MetaboHUB-MetaToul-FluxoMet / RTMet

RTMet is a data workflow to process FIA-MS data coming from a bioreactor, find metabolites and fluxes, and send a feedback command to the system.

https://rtmet.readthedocs.io

GNU General Public License v3.0

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issues

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Replace InfluxDB by an embedded per-run SQLite database

#53 elliotfontaine opened 4 months ago
0
Have conda environments directly in workflow source/runs directories

#52 elliotfontaine opened 4 months ago
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Add an installation shell script for Linux/MacOS

#51 elliotfontaine opened 4 months ago
0
Autodetect copyright year

#50 elliotfontaine closed 4 months ago
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Use furo theme for docs

#49 elliotfontaine closed 4 months ago
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implement conda envs validation

#48 elliotfontaine closed 4 months ago
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Conda environments are not validated for packages presence and versions

#47 elliotfontaine closed 4 months ago
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Add guidelines for further development

#46 elliotfontaine closed 4 months ago
0
Show ads to other FluxoMet's projects in docs

#45 elliotfontaine opened 4 months ago
0
Update Cylc (and related packages) to 8.3.2

#44 elliotfontaine closed 4 months ago
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Add User Guides to the docs

#43 elliotfontaine closed 4 months ago
0
Add InfluxDB Template for preconfigured dashboard

#42 elliotfontaine closed 4 months ago
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Add config information for local deployment at FluxoMet

#41 elliotfontaine closed 4 months ago
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Build an InfluxDB template for metabolite monitoring

#40 elliotfontaine closed 4 months ago
0
Add Instrument name detection

#39 elliotfontaine closed 4 months ago
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Fix the loss of instrument metadata in trimmed mzML

#38 elliotfontaine closed 4 months ago
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Trimmed mzml loses its metadata (instrument, etc)

#37 elliotfontaine closed 4 months ago
0
Refactor InfluxDB tasks

#36 elliotfontaine closed 4 months ago
0
A bash install script for quick install of the project

#35 elliotfontaine opened 4 months ago
1
Add basic github actions

#34 elliotfontaine closed 4 months ago
1
Setup github actions

#33 elliotfontaine closed 4 months ago
0
Add spelling and hyperlink checks in documentation

#32 elliotfontaine opened 5 months ago
0
Write a development guide

#31 elliotfontaine closed 4 months ago
0
Write user guides

#30 elliotfontaine closed 4 months ago
0
Implement end-to-end testing of the workflow

#29 elliotfontaine opened 5 months ago
0
Add tests for homemade tasks

#28 elliotfontaine opened 5 months ago
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Add optional trimming of scans before preporcessing

#27 elliotfontaine closed 5 months ago
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Add user config validation

#26 elliotfontaine closed 5 months ago
0
Add 'scans window' option for the binner task

#25 elliotfontaine closed 5 months ago
0
influx cli is an unlisted dependency

#24 elliotfontaine closed 4 months ago
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fix: PDF build of docs

#23 elliotfontaine closed 5 months ago
1
PDF/LaTeX build of the documentation fails

#22 elliotfontaine opened 5 months ago
0
fix: InfluxDB error handling and support for the cloud version

#21 elliotfontaine closed 5 months ago
0
Add autodoc for rose config files in Sphinx documentation

#20 elliotfontaine closed 5 months ago
1
Add hovering tooltips for glossary terms in doc

#19 elliotfontaine opened 5 months ago
0
Auto-detect or remove the `spectrometer_id` config option

#18 elliotfontaine closed 4 months ago
0
Implement optional housekeeping

#17 elliotfontaine opened 5 months ago
1
Allow user to chose the window of scans to keep (binneR)

#16 elliotfontaine closed 5 months ago
0
BinneR doesn't correctly detect the injection scans range

#15 elliotfontaine closed 5 months ago
1
Make the workflow work with an InfluxDB Cloud instance

#14 elliotfontaine closed 5 months ago
0
First draft of the documentation

#13 elliotfontaine closed 5 months ago
0
Replace homemade annotation script with W4M's `lcmsmatching`

#12 elliotfontaine opened 5 months ago
1
Peaks near the border of a bin are split

#11 elliotfontaine opened 5 months ago
0
Validate user config

#10 elliotfontaine closed 5 months ago
0
Adding binneR to conda-forge for easier installation

#9 elliotfontaine opened 5 months ago
0
BinneR crashes when only one scan is selected

#8 elliotfontaine opened 5 months ago
2
Refactor `.raw` files detection

#7 elliotfontaine closed 5 months ago
1
Update BROUILLON.md

#6 elliotfontaine closed 6 months ago
0
testing readthedocs webhook

#5 elliotfontaine closed 6 months ago
0
Readthedocs setup

#4 elliotfontaine closed 6 months ago
0