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MetaboHUB-MetaToul-FluxoMet
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RTMet
RTMet is a data workflow to process FIA-MS data coming from a bioreactor, find metabolites and fluxes, and send a feedback command to the system.
https://rtmet.readthedocs.io
GNU General Public License v3.0
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Replace InfluxDB by an embedded per-run SQLite database
#53
elliotfontaine
opened
3 weeks ago
0
Have conda environments directly in workflow source/runs directories
#52
elliotfontaine
opened
3 weeks ago
0
Add an installation shell script for Linux/MacOS
#51
elliotfontaine
opened
1 month ago
0
Autodetect copyright year
#50
elliotfontaine
closed
1 month ago
0
Use furo theme for docs
#49
elliotfontaine
closed
1 month ago
0
implement conda envs validation
#48
elliotfontaine
closed
1 month ago
0
Conda environments are not validated for packages presence and versions
#47
elliotfontaine
closed
1 month ago
0
Add guidelines for further development
#46
elliotfontaine
closed
1 month ago
0
Show ads to other FluxoMet's projects in docs
#45
elliotfontaine
opened
1 month ago
0
Update Cylc (and related packages) to 8.3.2
#44
elliotfontaine
closed
1 month ago
0
Add User Guides to the docs
#43
elliotfontaine
closed
1 month ago
0
Add InfluxDB Template for preconfigured dashboard
#42
elliotfontaine
closed
1 month ago
0
Add config information for local deployment at FluxoMet
#41
elliotfontaine
closed
1 month ago
0
Build an InfluxDB template for metabolite monitoring
#40
elliotfontaine
closed
1 month ago
0
Add Instrument name detection
#39
elliotfontaine
closed
1 month ago
0
Fix the loss of instrument metadata in trimmed mzML
#38
elliotfontaine
closed
1 month ago
0
Trimmed mzml loses its metadata (instrument, etc)
#37
elliotfontaine
closed
1 month ago
0
Refactor InfluxDB tasks
#36
elliotfontaine
closed
1 month ago
0
A bash install script for quick install of the project
#35
elliotfontaine
opened
1 month ago
1
Add basic github actions
#34
elliotfontaine
closed
1 month ago
1
Setup github actions
#33
elliotfontaine
closed
1 month ago
0
Add spelling and hyperlink checks in documentation
#32
elliotfontaine
opened
1 month ago
0
Write a development guide
#31
elliotfontaine
closed
1 month ago
0
Write user guides
#30
elliotfontaine
closed
1 month ago
0
Implement end-to-end testing of the workflow
#29
elliotfontaine
opened
1 month ago
0
Add tests for homemade tasks
#28
elliotfontaine
opened
1 month ago
0
Add optional trimming of scans before preporcessing
#27
elliotfontaine
closed
1 month ago
0
Add user config validation
#26
elliotfontaine
closed
1 month ago
0
Add 'scans window' option for the binner task
#25
elliotfontaine
closed
2 months ago
0
influx cli is an unlisted dependency
#24
elliotfontaine
closed
1 month ago
0
fix: PDF build of docs
#23
elliotfontaine
closed
2 months ago
1
PDF/LaTeX build of the documentation fails
#22
elliotfontaine
opened
2 months ago
0
fix: InfluxDB error handling and support for the cloud version
#21
elliotfontaine
closed
2 months ago
0
Add autodoc for rose config files in Sphinx documentation
#20
elliotfontaine
closed
2 months ago
1
Add hovering tooltips for glossary terms in doc
#19
elliotfontaine
opened
2 months ago
0
Auto-detect or remove the `spectrometer_id` config option
#18
elliotfontaine
closed
1 month ago
0
Implement optional housekeeping
#17
elliotfontaine
opened
2 months ago
1
Allow user to chose the window of scans to keep (binneR)
#16
elliotfontaine
closed
2 months ago
0
BinneR doesn't correctly detect the injection scans range
#15
elliotfontaine
closed
1 month ago
1
Make the workflow work with an InfluxDB Cloud instance
#14
elliotfontaine
closed
2 months ago
0
First draft of the documentation
#13
elliotfontaine
closed
2 months ago
0
Replace homemade annotation script with W4M's `lcmsmatching`
#12
elliotfontaine
opened
2 months ago
1
Peaks near the border of a bin are split
#11
elliotfontaine
opened
2 months ago
0
Validate user config
#10
elliotfontaine
closed
1 month ago
0
Adding binneR to conda-forge for easier installation
#9
elliotfontaine
opened
2 months ago
0
BinneR crashes when only one scan is selected
#8
elliotfontaine
opened
2 months ago
2
Refactor `.raw` files detection
#7
elliotfontaine
closed
2 months ago
1
Update BROUILLON.md
#6
elliotfontaine
closed
3 months ago
0
testing readthedocs webhook
#5
elliotfontaine
closed
3 months ago
0
Readthedocs setup
#4
elliotfontaine
closed
3 months ago
0
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