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Odd behavior found when adding bioproject (PRJEB4873) which has 1 biosample (SAMEA2229347) and 6 experiments each with 1 run (e.g. ERR359850).
After loading biosample XML, Casey found that 7 record…
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- **Patric database** was found from
Guglielmini, J., Bourhy, P., Schiettekatte, O., Zinini, F., Brisse, S., & Picardeau, M. (2019). Genus-wide Leptospira core genome multilocus sequence typing for …
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When I run `entrez_search()` with `use_history` and `retmax = 5`, the function will respect this and return 5 UIDs:
```
biosample_uid
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The `strain` column isn't unique. Might need to detect this, and appened the `GCF_` number to the strain to discriminate?
```
/home/tseemann/tmp/B.cereus/human_readable/refseq/bacteria/Bacillus/c…
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### BioProject Checklist:
---------------
- [ ] PRJNA526626
- [ ] PRJNA567655
Follow the [Gene Expression Protocols](https://github.com/mestato/statonlabprivate/wiki/Gene-Expression-Analysis-Las…
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Hi Hi the lovely people of OLS dev team,
You are all angels, but will even become rockstar angels if you could please consider adding the extra columns to https://www.ebi.ac.uk/ols/ontologies table…
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Dear Torsten,
**first of all thanks for your efforts on Prokka ! The whole community owe you one.**
I annotated my assemblies with Prokka 1.14.6 with "--compliant" option.
When uploading the …
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Write accessory scripts to upload clean reads as biosamples and final assembly to nexstrain/GISAID
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### BioProject Checklist:
---------------
- [x] PRJNA549565
- [x] PRJNA357091
- [x] PRJNA507638
- [x] PRJNA505541
- [x] PRJNA480546
- [x] PRJNA480110
- [x] PRJNA419119
- [x] PRJNA374502
- [x…
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Hi,
I am having trouble running phyluce_ncbi_prep_uce_align_files_for_ncbi_targeted_locus_db.
Seems to not run into an error, but it creates empty fsa and tbl files.
I am using the path to my m…