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Hi Frank,
First of all congrats and thanks to share this great tool!
I've managed to run it on a small subset of our own patients. We usually test the immunogenicity of neoantigens as longer ep…
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Hi, I read the your three research papers, These works will surely promote our understanding of tumor evolution.
- The evolution of lung cancer and impact of subclonal selection in TRACERx
- Clonal…
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From @tavinathanson:
> I'm fairly unclear right now about how best, when using cohorts, to use epidisco results; for example using epidisco neoepitopes rather than https://github.com/hammerlab/cohort…
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Hi,
Aplogies if I am sking something pointless I am fairly inexperienced in coding.
I got this error: no such file or directory "assets"
![image](https://github.com/frankligy/SNAF/assets/694271…
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Hello,
Thank you very much for sharing this code!
I would be interested in testing your code on samples other than the ones published in the paper, and I wonder how to create the patients tree…
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Hello, Fotakis.
I am using neofuse and I encountered an IndexError during the execution of the script `final_out.py`. The error occurs when the script attempts to access elements in a list that app…
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Hello, thank you for developing this useful pipeline!
I have a technical question that I would like to address you.
I noticed from the file file **A5_A3_NetMHC-4.0_junctions_ORF_neoantigens.tab**…
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Dear developers,
Could you advise me on running the pipeline on cancer cell line data?
In that case, we don't have the normal DNA, could we use a random individual or a panel of normals? I know it'…
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Help: please tell me how to solve this problem, thanks!
$ /path/Anaconda2/bin/deephlapan -P LNIMNKLNI -H HLA-A02:01
Using TensorFlow backend.
===========================================…
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I am trying to install altanalyze in a conda environment on linux server. I tried to install directly by `pip install AltAnalyze` but there comes an error:
```
ERROR: Command errored out with exit s…