-
@k-florek @fanninpm @erinyoung @tives82 @DrB-S
I have been using Cecret for all things SARS-CoV-2 and our research lab just started to work up a NGS methodology for Human Norovirus sequen…
-
Hi,
Thanks very much for the great tool. We've been trying CRAQ out in several of our assembly projects and we sometimes run into strange behavior where analysis seems to finish ok, but low_confidenc…
-
### Description of feature
https://www.zymoresearch.de/products/zymo-seq-switchfree-3-mrna-library-kit
-
To reduce cost, our lab uses combinatorial dual indices (HiTOM primers) to multiplex NGS reactions. The pipeline looks something like this:
Merge paired-end reads: FLASh
Demultiplex/split based on…
-
Request: Help with Obtaining STAR Alleles from VCF Files (Illumina Short Read Sequencing, Dragen Variant Caller)
Hi,
I’m looking to get STAR alleles for a set of VCF files generated from Illumina …
-
## Background
Cloud-Pipeline has flexible model of object `metadata` along with project templates.
With this model a lot of common tasks could be accomplished, such as grouping and managing togethe…
-
### Description of feature
Hi,
Thank you for creating this awesome pipeline. I'm wondering if there are any modules within sarek that do disambiguation of mouse and human reads for PDX samples? Fo…
-
### Description of the bug
Hi!
I'm running the pipeline with the following pipeline:
```
nextflow run nf-core/circdna \
-r 1.0.4 \
-profile docker \
-resume \
--max_cpus 9 \
--max_memory …
-
Hi,
When trying to run admin/Build_Trinotate_Boilerplate_SQLite_db.pl Trinotate, I receive the following error:
admin/Build_Trinotate_Boilerplate_SQLite_db.pl Trinotate
* [Tue Nov 14 16:45:31 2…
-
I have 2 following steps in CWL workflow that are executed conditionally (using when statement) and output from one of them is input for the second one, and second one contains scatter. There is a fra…