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Hi,
maybe not the place for this, but I wonder if anyone has encounter a similar issue.
I don't get convergence in my NMDS when using:
ordinate(ps1, "NMDS", "bray")
(My pseq looks like this):
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sfeds updated
2 years ago
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Hello,
I wanted to check if a plugin for ensembl_vep tool (already in Galaxy) could be added to te tool: **nmd** or nonsense mediated decay which predicts whether a transcript escapes the nonsense me…
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Hi all,
Fantastic downstream tool!
I have generated some rMATS results following STAR alignment to GENCODE v42 genome. Following your guide I created a bed12 file from the comprehensive gene annot…
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home-manager imports nmd for manual usage, wich breaks hydra support because nmd uses import from derivation
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postdoc suggested it
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Is it desirable to have the NMDS code in QIIME/PyCogent ported to this project, now that we have an ordination subpackage? QIIME has an nmds.py script that has a similar interface to principal_coordin…
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I am trying to plot NMDS plot from microbiome data in phyloseq and I used below command, It is working perfectly, but here I used raw otu count for NMDS plot and the rank-threshold transformation is …
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Hi, I annotated rsID rs121964985 (hg38, chr3:49417892)
and cravat outputed following gene and transcript:
AC104452.1 ENST00000636166.1
whereas in all_mapping filed it outputed
{"AC104452.1"…
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Just reporting a warning out of ggplot
That might be because the trans_beta$new is grouped by R…