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I removed several headings that had been added early on in brainstorming for this manuscript. If anyone is looking for ideas of how to contribute, you could definitely look into how these drug develop…
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This is a bit preliminary, but I wanted to create a space to organize.
There are a few sections that we should probably add to the new standalone vaccine paper:
- Adenovirus-vector vaccines (@nils…
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One thought: ImmPort has a lot of vaccine studies w/ HLA type and RNA-Seq data (maybe some have germline WES?)
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Source: GEO
```yaml
label: GSE79021
title: >
Gene expression profiling of human prostate tumors identifies chromatin
remodeling as a molecular link between obesity and lethal prostate can…
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Some data types associate a score to each sequence. This is for example the case for PBM, CSH, ...
We could
- sort the sequences by scores,
- run motif discovery (in particular `oligo-analysis`…
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10x Barcodes with v2 chemistry work like this:
examples from `merge_barcodefiles_10x()`
looks like there [may be some confusion](https://github.com/pachterlab/sircel/blob/master/sircel/IO_utils.py#L…
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## patch-seq assay
Label: patch-seq assay
Alternative term(s): patch clamp and RNA sequencing assay
Definition: A single-cell RNA sequencing assay that takes a patch clamp recording from a cell a…
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Hi,
Recently, I have get the access to dataset EGAD00001007718 from EGA, however all the data are cram format. If I want to covert the data to bam format, the reference genome is necessary for…
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# 2024.03.12 (화)
* 오전: 임상시험 투약 참관 > 선택심화 OT > 혈액내과/약리학교실 빅데이터 회의 참관
* 오후: 통계학, R 공부 (핵심 확률 및 통계학, R까기2) > AIMS 회의 참관 (오가노이드 치료제 개발 관련)
# 2024.03.13 (수)
* 오전: R 공부 (R까기2, 한성필 교수님 강의 영상)
*…
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Could you add in Molecule Dictionaries 'Oligopeptide' as new Drug Type?