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All models from biomodels had their annotations extracted and put into rdf files. Create the equivalent omex files that combine the rdf file and associated model. Send biomodels a link to the list of…
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@SunnyXu Can you attach the OMEX file with the log axis that didn't work?
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Example: https://github.com/virtualcell/vcdb/blob/main/published/biomodel/omex/sbml/biomodel_12119723.omex
The archive has 6 SBML files, but the SED-ML only simulates 3. The native version, only ha…
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### Simulation tool
### Simulation tool
---
id: vcell
version: 7.5.0.27
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.6.0.27/biosimulators.json
specificationsPa…
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How is this intended to work with OMEX Metadata stored in the various supported formats (RDF-XML, turtle, etc)?
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Suggested that compact forms be used where possible. For example:
bqbiol:hasTaxon ;
should be
bqbiol:hasTaxon 9895 or something similar
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I was doing some testing on my Debian 8 VM and I noticed that [extractEntryToString](https://sbmlteam.github.io/libCombine/html/class_combine_archive.html#a06187efd1e1c8270fee1eb9a19a15c1d) only works…
0u812 updated
6 years ago
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A hierarchical SBML file can be broken into multiple SBML files. When an SBML model is selected for simulation, it may have dependencies of other SBML files. The only way to know these dependencies …
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This link https://co.mbine.org/standards/omex (on the front page of https://combinearchive.org/index/) doesn't seem to be working.