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Indicate a potential ORFs. From: http://gmod.827538.n3.nabble.com/ORF-viewer-track-td4059022.html
This is the artemis view:
![ceenikloglaahehh](https://user-images.githubusercontent.com/751274…
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The code that should be modified is shown in the figure
![image](https://github.com/user-attachments/assets/708152c7-4f73-4ef7-8d0d-ae4b1a3b106f)
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Hi all,
Sorry if this question is silly.
I have several fasta files from some kegg orthogoly of my interest which I extracted from prodigal and hmmsearch result. For example, the nifH, that is the…
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Hi there,
I've run into a new problem with running FeGenie. Previously I've run the script with no issue however now I receive the following error everytime I try to run
`Consolidating summary …
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Hello,
I've been doing some test with 454 data. I'm running metAMOS with metavelvet and fraggenescan, and stop at the FindORFS step. I initially wanted to use MetaGeneMark but it's not available for n…
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Thanks for maintaining this great software! I'm having an issue with easy-taxonomy using GTDB (but not NCBI with the same query input), described below. Using a conda install of version 15.6f452.
…
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The current README file needs to be updated for data sources and access options.
We will also add website hosting with restricted access.
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It is my understanding that OrfM outputs continuous stretches of codons without a stop codon in the middle, but I am getting output with embedded stop codons, or what I believe are stop codons. I trie…
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Hi,
First of all, thank you for such wonderful tool. I'm working with proteins translated from new ORFs and I predicted that the new protein interact with another protein, say for e.g. protein X. N…
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CC @camilogarciabotero, ref. #297
How would a user go about findings ORFs with BioSequences? To do this, they need to be able to do several fundamental operations that BioSequences currently doesn…