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When using `blast_rec`, headings in _blastresult_{query}.fasta_ and _blastresult_{subject}.fasta_ are not included. I suppose they are the same as output from blast_rec. Right?
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Hi developer,
Thanks you for your program. It is quite easy to use and generate valuable results.
I want to get help with the de novo protein structure prediction using PSIPRED. I always got th…
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Gene orthology knowledge curation (i.e. from the [Panther database]()) relates gene instances to gene families. It's relatively easy to infer guess what concept nodes need to be captured, i.e. `bioli…
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Hello,When I run this command,I don‘t know where is genome_annotation.tsv ? Can I download it manually？
scenicplus grn_inference motif_enrichment_dem \
--region_set_folder 'outs/region_sets' \
…
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Hello again,
I am running 90 days now Orthofinder for 30 species. Yesterday my job killed in the gene constuction step (raxm-ng).
So, is there any solution to rerun orthofinder again from this st…
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Hi,
I am trying to see if cesar2 works correctly on my computer, and encountered the following error with the mini example. I was wondering if you could help? Thank you so much!
Running "annotat…
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Hello Florent,
The pipeline is going further but again I am afraid I have encountered a new error.
First, the topGO library was not installed in the Dockerhub build, I solved it by manually insta…
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**Describe the bug**
Hello, I am trying to perform run_scenicplus. It gets through part of the way, but then will just stop running and I don't know why. I'm fairly new to using Python so I'm not sur…
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_From @ChristianLieven on July 6, 2017 16:6_
#### Problem description
I am currently reconstructing a metabolic model, for which I am adding [confidence scores](http://www.nature.com/nprot/journal/v…
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I used orthogroups identified in OrthoFinder as input for HyPhy analyses. I am working with 27 species, and there are 2,592 orthogroups identified as single-copy in all species. To include more orthog…