-
Hello! I am trying to use dotPlotly to compare a PacBio long read de novo assembly (produced with PacBio's assembler IPA) to a reference genome to visualize structural variations. I aligned the assemb…
-
- Quand je suis sur la fiche d'un PAF, j'ai un onglet OBSERVATIONS.
- Quand j'accède à cet onglet, celui-ci liste par date décroissante les observations dans une périmètre prédéfini autour du PAF (pa…
-
Hi,
I am trying to assemble the genome of a worm, and I was hoping that minipolish would detect the mitochondrial genome and output it in the gfa file.
I have sequencing one of my worm species a l…
-
Hi,
I couldn't find any utilities for filtering pafs and this tool seems to be the most capable and toolkit-like.
Maybe it would be an option to put in a filter to avoid users having to hack tog…
-
@KelliSmith17 is hell-bent on making circos plots, and has some code to convert the pafr table to the `karyotype` and `links` files required for this.
If we can package it up with a nice API for u…
-
Hi Wenjie,
I have meet some problem when using `wgatools paf2maf`. It could worked with minimap2 and anchorwave PAF output, but it failed with FastGA and wfmash alignment now. I checked the alignme…
-
The new version of PAF has not been fully tested with PAF Cluster and PAF Cloud. In order to have these environments effectively supported we need to test them and confirm it works.
-
Hi,
I am running the step-by-step pangenome pipeline and failed at `filter_paf_deletions` in `cactus-graphmap`
Based on this log `Exit reason: MEMLIMIT`, it should be caused by insufficient memo…
-
# Story
Das Projekt ist auf op-paf.de bekanntgegeben.
# Akzeptanzkriterien
- Ein Newsbeitrag ist erstellt
- Es gibt einen Absatz zum Projekt
- DSEE taucht bei den Sponsoren auf
-
```
PAF::DB and PAF::Registration are a real mess in the wake of launch craziness.
need to:
- consolidate methods
- break up large methods (200+ lines? ick.)
- consider breaking out account manageme…