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dwinter
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pafr
Read, manipulate and visualize 'Pairwise mApping Format' data in R
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read_paf retrieving only NAs
#45
smartise
opened
1 month ago
0
plot_synteny with multiple targets/queries
#44
SAMtoBAM
opened
1 year ago
0
bug: plot_coverage breaks if using target=FALSE andd fill="qname"
#43
MmasterT
opened
1 year ago
0
remove labels on coverage plot
#42
svedwards
opened
1 year ago
0
clean up large dotplots
#41
svedwards
opened
1 year ago
0
Can the switch the target to x-axis and query to y-axis?
#40
gematakbir
opened
1 year ago
0
excessive memory usage.
#39
callumparr
opened
1 year ago
0
combine replicates
#38
mbartl13
opened
2 years ago
0
NA introduced by coercion
#37
btredcup
opened
2 years ago
0
Can't read dotplot results
#36
Estherrr1997
opened
2 years ago
1
Overlay multiple pafs
#35
mbartl13
opened
2 years ago
0
display of dot plot
#34
zhaotao1987
opened
2 years ago
1
changing axis labels
#33
melodysyue
opened
2 years ago
1
dotplot display
#32
mdsufz
opened
2 years ago
0
plot_synteny error when target length is > query length
#31
mountainmanjared
opened
2 years ago
0
Can pafr display the percentage of reference sequences aligned by query in Coverage plot?
#30
Xiao-Zhong
opened
3 years ago
1
Expand scale_fill_brew palette in pafr
#29
aaronphillips7493
opened
3 years ago
1
Make synteny plot colours user settable
#28
dwinter
opened
3 years ago
0
How to find which coordinates are repeating in target chromosomes
#27
khush876
opened
3 years ago
2
.paf to circos?
#26
dwinter
opened
3 years ago
1
plot_synteny() breaks for query/target with same name
#25
philippbayer
opened
3 years ago
0
dotplot order by tstart
#24
ruolin
opened
3 years ago
1
set size of sequence labels in dotplot()
#23
fraca
opened
3 years ago
3
Error in r[["strand"]] : subscript out of bounds
#22
DanielleMStevens
opened
3 years ago
1
Cannot create the alignment
#21
agnibhat
closed
3 years ago
2
speed up tag processing
#20
dwinter
closed
3 years ago
0
paf to syri
#19
dwinter
opened
4 years ago
0
tidy up code style
#18
dwinter
closed
4 years ago
0
Expand README
#17
dwinter
closed
3 years ago
0
Use helper `tests/testhat/helper_` file to avoid code duplication in tests
#16
dwinter
closed
4 years ago
0
Allow shading of coverage plot to reflect mtaching query/target sequence (or other attribute)
#15
dwinter
closed
4 years ago
0
Dashes misplaced when using custom ordering for dotplot
#14
dwinter
closed
4 years ago
0
Nice labels and theme for synteny plot
#13
dwinter
closed
4 years ago
0
minor typos, one query about line 115
#12
klee8
closed
4 years ago
0
Export and document base-pair-scale labelers for all plots
#11
dwinter
closed
4 years ago
0
Useful default xlab, ylab on results of `plot_coverage`
#10
dwinter
closed
4 years ago
0
Test documentation/examples
#9
dwinter
closed
3 years ago
0
highlight regions of dotplot
#8
dwinter
closed
4 years ago
0
Alternative ordering for dotplot
#7
dwinter
closed
5 years ago
0
vignette
#6
dwinter
closed
3 years ago
1
Unstated dplyr dependency
#5
AmelieGersch
closed
5 years ago
0
Example data
#4
dwinter
closed
5 years ago
0
class / print function for .paf table
#3
dwinter
closed
5 years ago
0
tests
#2
dwinter
closed
3 years ago
0
Documentation
#1
dwinter
closed
3 years ago
1