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Hi,
this looks like a great tool -- we haven't tried it yet but before we do I wanted to ask whether you have anything in place in the pipeline that converts variant coordinates from SV and small var…
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Hi,
Now I'm already doing other steps, but I didn't do pan-genome decontamination,
because I am using roary for the first time, Counld you tell me how to do this in detail?
Thanks!
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Figure positioning and zooming is currently not possible. Scrolling is also currently impossible due to width/height limitations from AngularPlasmid. Use should be able to pan and zoom.
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## Short description of the problem
Even in single-contig circularized genomes, `anvi-run-hmms` does not reliably detect the 5S rRNA gene.
## anvi'o version
```
Anvi'o ......................…
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Dear developer!
I have a dozen high-quality genomes of diploid mammals, and I have obtained a graphical pan-genome through Minigraph-Cactus, which we think is accurate and perfect. Of course, we want…
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Hi,
I'm trying to separate my genomes into shared and unique genes between two groups, and while running query_pan_genome with the different parameters it seems to work. I get three spreadsheets am…
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Hi,
I two sets of isolates and am trying to find the differences between them. I have run the following script;
query_pan_genome -a difference --input_set_one ../path_to_set1/_.gff --input_set_two ..…
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Hello!
When I run the software according to the following code, there is an index error. How can I solve this problem?
Here's my code:
#### step1:build index
scTE_build -g panT…
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## Short description of the problem
Anvi'o told me that my internal genomes all have the same hash and won't accept the flag it suggested to use to overcome that.
## anvi'o version
Anvi'o ...…
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Hi Shujun,
Another question. I'm running panEDTA on a bunch of species. It says it's successfully reannotating the structurally annotated TEs, e.g.:
> Sat Oct 14 15:10:05 EDT 2023 EDTA final …