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Transferred from sars-cov-2-variants/lineage-proposals#1802
Found with @aviczhl2 's phylogenic tree analysis tool.
Spotted first by @aviczhl2 .
KP.3.1> A1620G(Orf1a:E452G), del29728-29776(#2646…
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Love this package!
Current outputs can be super verbose, especially for Pango lineages. I propose a cli flag to specify verbosity level:
- basic: output only the the release title
- mild: curre…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1908
XEC has three main branches one defined by Orf1a:A599T the other defined by Orf1a:I1367L that is convergent with Kp.3.3.4
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Even though I spend about a lot of time working with Pango lineages, I get confused what the aliases correspond to.
It would be amazing if we could show the unaliased Pango lineages in a tooltip.
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Thank you for developing this incredible tool! I'm testing it out by reproducing some of the recombinant clades described in [pango-designation](https://github.com/cov-lineages/pango-designation). So …
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This lineage is described at https://github.com/cov-lineages/pango-designation/issues/499 and [CoVariants](https://covariants.org/variants/22C.Omicron)
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This lineage is described at [PHE Genomics Variant-Definitions](https://github.com/phe-genomics/variant_definitions/blob/main/variant_yaml/dipped-bubbling.yml), https://github.com/cov-lineages/pango-d…
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This lineage is described at [PHE Genomics Variant-Definitions](https://github.com/phe-genomics/variant_definitions/blob/main/variant_yaml/radiator-ditto.yml), https://github.com/cov-lineages/pango-de…
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Use the following list as mutations to always include:
https://www.pango.network/summary-of-designated-omicron-lineages/
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I've been looking at the new temporary "long" ARG, in which there are samples belonging to 24 Pango X categories, as clsssified by Viridian (chance sampling means these are not quite the same as the 3…