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Dear FragPipe team,
I am currently processing some phophoenrichment samples using FragPipe. I was wondering whether there is not only the option to filter out modified peptides for protein quantifica…
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I have the same issue with this #1310 unable to resolve. The error happens when searching specific PTM modifications search, like below. I used TMT11 plex. The monoisotopic mass of 156.1151 on CHK and…
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Hi,
We are performing glycopeptide identification and quantification across many samples. The data in the "assigned modifications" column of the "combined_modified_peptide.tsv" file gives only the …
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Hello,
I am learning to refine our predicted spectral library to better match various samples (various proteolytic peptides, novel modifications, etc.). I am starting with standard unmodified tryptic…
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hi pyAscore team.
I have a problem that my mass spectrometry data had two modifications to K, and when I submitted the code, the following example spectral data data seemed to be wrong. , and two K m…
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Hello Vadim and Team,
I am using a spectral library for modified histone peptides that I built in skyline. I have some questions regarding using this library...
1. What is the best way to conver…
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I am using `fst` version 0.9.8 with R-4.3.2.
I am writing 'data.table' class data frames in a `for` loop. The tables have different number of rows as they are the result of in-silico chemical modi…
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- [x] Number of Peptides identified: Total number of peptide Sequences identified.
- [x] Number of PeptidoForms: Number of Peptides + modifications + position of the modification.
- [x] Number of …
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@jadianes @jgriss @noedelta Since our last dev release, we had a lot of releases and discussions for the potential improvements. After discussing with Jose and Johannes, here are a proposed list of to…
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Hi I installed the package inside my miniconda and I am working in the (ms proteomics) environment within the cd of my report.tsv from DIA-NN.
However
(msproteomics) (msproteomics) PS D:\Data\Dom…