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We can keep this course short (1-day), covering only some general/basic concepts in phylogeny:
- What is a phylogeny
- MSA
- Phylogenetic inference
- Tree uncertainty (bootstrap)
- Bayesian inf…
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About the Server :
Description: Ubuntu 16.04.7 LTS
Release: 16.04
Codename: xenial
I installed the ktmeaton plague phylogeography snakemake pipeline in an environment using mam…
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**New publications that have not yet been incorporated into v1.2. These are provided for users to evaluate and incorporate if desired.**
Marchi, Damiano, et al. "The locomotion of Babakotia radofi…
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Hello all,
I am interested in simulating large "landscapes" of connected demes parameterized by species distribution models for neutral demographic inference in non-model species. A tough line I'm …
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- last version of the raw reads for Leptospira assemblies **did not have quality check** nor **trimming** done before assembly.
- to assure the quality of all isolates before assemblies, we will **re…
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Error occurred during a continuous phylogeography spreaD3 analysis. When 'Render to D3' is performed and a name containing an underscore is entered, the following error message appears:
c:\Users\MK\D…
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*Paper*: Ramírez-Chaves, H.E., Alarcón Cifuentes, M., Noguera-Urbano, E.A., Pérez, W.A., Torres-Martínez, M.M., Ossa-López, P.A., Rivera-Páez, F.A. and Morales-Martínez, D.M. 2023-05-30. Systematics, …
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Human - [1000 genomes data](https://www.internationalgenome.org/) might not be the best currently available. Or [gnomAD](https://gnomad.broadinstitute.org/downloads), which has hella more genomes. It'…