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Thanks for sharing this amazing tool! I am running like this:
```
kdb --db-type standard --threads 30 --cache-dir .
```
And I continue to get an error like this:
```
subprocess.CalledProce…
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Hi!
After running pLannotate on my plasmid sequence, the plasmid name in the LOCUS defline by default "plasmid". Would it be possible to pass through the name of the sequence in the input fasta file…
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HI there,
while tying to compile the standard database or a custom database with plasmid I receive the error:
`gzip: plasmid.1.1.genomic.fna.gz: invalid compressed data--format violated`
Shou…
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Hi there, I ran a run on the same plasmids using version 3.1.9, which I had previously run using version 3.1.5. I ran this on about a thousand plasmids. However, I have gotten several hundred plasmids…
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All plasmids are here: https://www.addgene.org/ASAP_Discovery/
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When creating multiple PCR fragments from plasmids, I end up filling the window. Horizontal scroll is enabled, but only if I manually drag the scroll bar. The app should allow horizontal scroll while …
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https://www.ncbi.nlm.nih.gov/genome/plasmids/154?
awk -F"\t" '{print $7}' genomes_plasmids.txt -- for genbank $7, for refseq $6
esearch -db nucleotide -query CP007178 | efetch -format fasta > te…
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Hello I'm trying to create the standard Kraken 2 database, with the following command:
kraken2-build --standard --threads 16 --db kraken-Sdb
I'm getting this:
Step 1/2: Performing rsync file …
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(from the BioJS workshop in June 2012)
Represent plasmid annotations in a circular and linear way using an abstract representation. Proposed by Frank Schwach http://plasmogem.sanger.ac.uk/
@fschwach…
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Thanks for this great tool.
Im using your tool using a custom database for plasmid as available through Kraken2. I keep getting the reports with taxa names.
Any chance I can generate a Bracken o…