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Hi~
I got my data(.bam file) at http://atlas.gs.washington.edu/mouse-atac/data/. And I generated snap file using the bam file according to your instruction.
But I don't have a CSV file tha…
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Hi there,
Thanks for keeping up with my questions. As bicycle is able to from differential analysis between two different groups i.e treatment vs control. I wanted to know if bicycle can perform com…
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Hi,
I want to used your software to do a QC on my ATACseq data performed on cucumis melo species. I'm wondering if it's possible and how I can integrate my genome on your image ?
Thanks in adv…
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- [x] teach parser about `bool, int8, int16, int32, int64, float16, float64`
- [x] make sure Halide types are properly constructed
- [ ] make sure polyhedral dependence analysis behaves correctly fo…
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Hi I am wanting to switch from my ChIP-seq analysis to displaying the genes that correspond to the peaks I created with MACS2, these are the commands I was doing so I loaded the reference genome and m…
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### Prerequisites
+ [ ] Have you read [Feedback](https://guangchuangyu.github.io/chipseeker/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)?
* [ ] ma…
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- [x] Confirm which kind of statistical analysis was applied in delta data. (MMU or chi-square)
-- Confirmed is chi-square test
- [x] Apply color code in MA-plot.
- [ ] Expand delta data from low-r…
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Hello dev team,
Thanks for the amazing tool. I would like to understand the TFinfo and Base GRN files a little bit better.
The TF info file looks like this: What are these factors_direct and fa…
momur updated
3 months ago
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Hi,
This is not a technical issue but a conceptual question.
Till date, I have been using HOMER for ChIP-seq and ATAC-seq peak annotation. As I intend to perform TOBIAS DNA foot printing analys…