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Thank you for your work.
When I run vadr 1.6.3 on this virus: https://www.ncbi.nlm.nih.gov/nuccore/KY933089 (fasta file)
I obtain nothing in the 'pass' tsv file.
In the 'fail' tsv file, I get t…
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How can I process my own protein
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### Discussed in https://github.com/JRaviLab/MolEvolvR/discussions/24
Originally posted by **jananiravi** July 14, 2024
- [ ] from UniProt to NCBI | `up2ncbi`
- [ ] NCBI to UniProt | `ncbi2up…
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Hey, just a thought. You could probably do something similar with the new gLM2 and Sergey's "Categorical Jacobian" method, and this would be very useful for filtering binders designed by RFdiffusion, …
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I think the Protein advanced search > Pathway ID/ Disease ID should only return exact matches.
When I tested the example "hsa:3082" it should only return the result "P14210-1", bit instead it also…
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Hi,
First of all, thank you for such wonderful tool. I'm working with proteins translated from new ORFs and I predicted that the new protein interact with another protein, say for e.g. protein X. N…
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Dear Osamu, @ogotoh
I followed your instruction from [issue 77](https://github.com/ogotoh/spaln/issues/77) to successfully map and align protein sequences to a genome. However, the "match format"…
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Dear BFEE2 team,
I am using BFEE2 to determine the binding energy between two large proteins (~150 amino acids for the ‘ligand’ and ~400 amino acids for the ‘protein’, respectively). I am using the…
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Hi,
I have been using Tidyproteomics for processing one of my proteomics datasets and encountered a few questions that I couldn’t find clear answers to in the documentation. Specifically, in the prot…
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Hi,
I am exploring MolModa and like it a lot. However, I can't see how I can import a protein structure that has not been published yet (i.e. is not in PDB database).
Please advise.
Thank you…