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Hi Vadim,
I hope you're doing well. I'm encountering an issue while running DIANN on a Linux-based HPC cluster. Occasionally, the analysis crashes with the following error:
Segmentation fault (c…
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*updated*
In the spec document, we use_
protein-quantification-unit and protein-quantification_unit
For consistency reasons, it should be protein_quantification_unit or protein-quantification_uni…
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Hi @lsilvam:
Could you make a design draft of the report we intent to create to describe the protein quantification? Something drawn with pen and paper would suffice.
We can then work on a Quart…
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@yafeng Thank you for a great tool. I just wanted to check in on the status of the vignette you mentioned in a previous thread using your differential expression method on an output from DIANN? I am j…
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I hope this message finds you well. I am reaching out with a few questions regarding the identification and quantification of proteins and peptides using DIANN.
I have noticed that the results obta…
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Dear Vadim,
I would like to ask a very basic question about Protein.Group in dia-NN. Below is an example of the protein groups extracted from the pg_matrix.
Protein.Group …
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Hi,
Thanks for developing this amazing search engine!
I am working on searching cell proteome with two conditions (target KO vs WT). When I look at the precursors of the target protein in the pr…
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Dear Demichev,
We want to repeat the results of another laboratory. We got the raw data of their experiment and all their diann parameters, but not their spectral library. They used the 1.8.1 version…
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First and foremost, I would like to thank you for developing the fantastic DIA-NN tool.
I am currently working on a project where I aim to distinguish and quantify isoforms produced by alternative …
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Hi Vadim,
In the protein quantification module of QuantUMS, which column in the report can be used for protein quantification?
What's difference between .parquet file andt .tsv file?
Is there…