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Maybe I missed it.
Can one use TMT quantification with metamorpheous?
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Hi, Vadim,
If I want to extract peptide quantification as following, could I also got their protein names?
peptides.maxlfq
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*updated*
In the spec document, we use_
protein-quantification-unit and protein-quantification_unit
For consistency reasons, it should be protein_quantification_unit or protein-quantification_uni…
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I hope this message finds you well. I am reaching out with a few questions regarding the identification and quantification of proteins and peptides using DIANN.
I have noticed that the results obta…
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Hi @lsilvam:
Could you make a design draft of the report we intent to create to describe the protein quantification? Something drawn with pen and paper would suffice.
We can then work on a Quart…
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Hi Vadim and team,
I have done 3 plex dimethyl labeling on samples and am now trying to analyze them following the steps outlined in the plexDIA section. But as you can see below, after finished wi…
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Hello,
I am using DIA-NN to process multiplexed samples using dimethyl labeling. I would like to request a feature where your program can be used to derive the protein intensities for each of the c…
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Hi,
I just noticed that, in the linux version under the docker, xic folder wasn't generated with --xic argument and found out that the path was set to start with "/" so all xic parquet files gets s…
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[log_2024-11-26_18-48-29.txt](https://github.com/user-attachments/files/17929728/log_2024-11-26_18-48-29.txt)
**- Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab i…
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Dear Demichev,
We want to repeat the results of another laboratory. We got the raw data of their experiment and all their diann parameters, but not their spectral library. They used the 1.8.1 version…