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Hi there,
I'm new to proteomics analysis and R. I followed the tutorial on the website for the R package installation and completed the data entry. However, when I try to draw a heatmap with DEP2 …
EEnim updated
3 months ago
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# Abstract
Cytoscape is an open-source software to visualize and analyze biological networks. Developers can add new features to Cytoscape by developing their own Java-based apps by utilizing the C…
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With @hechth @bgruening
The EDAM ontology tools view is a great concept but would be much more useful if the following were addressed:
1. Text-searchable ontologies. Currently I have to scroll th…
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This issue is to provide a shared space (a bit more structure than slack) for all the members of the community working on tidy adapters/analysis frameworks for proteomics/metabolomics/mass spectroscop…
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We support a Contribution Annotation Framework that allows us to indicate roles of conributors. However, many tutorials still use the "old" style contribution metadata (without roles)
Updating this…
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Start pulling from the main branch, where I creatd the structure yu need to wokr on this.
Then, taking as reference some Bioconductor vignettes, draft a vignette showing the capabilities of our ama…
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## Problem Summary
Several values in HuBMAP metadata require consolidation or mapping updates to align with the current standards. The issue affects two categories:
- **Granularity Mismatch Mapp…
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Greetings,
this does not warrant a PR, but here is a suggestion that might ease searching programs in desktop environment by entering key words (also added translations for languages I know).
[D…
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Cite the new [scp workflow](https://arxiv.org/abs/2310.13598) in the vignette.
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I recently began using the Linux platform for work. I considered using our server, which is running Ubuntu 22.04.4 LTS, to run DIA-NN.
_I installed .deb version._ I converted .wiff to .mzml and kept …