UCLouvain-CBIO scp issues

UCLouvain-CBIO / scp

Single cell proteomics data processing

https://uclouvain-cbio.github.io/scp/index.html

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issues

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Differential analysis: non-conformable arguments

#65 samgregoire opened 4 days ago
3
n/p ratio clarification

#64 samgregoire opened 3 weeks ago
1
Unit testing scplainer (#59)

#63 cvanderaa closed 3 days ago
1
Improve documentation for visualization

#62 cvanderaa opened 2 months ago
0
error when using filterFeatures

#61 Axe2Ash closed 3 months ago
4
docs: illustrated addReducedDim in vignette

#60 cvanderaa closed 3 months ago
0
Unit testing scplainer

#59 cvanderaa opened 3 months ago
0
Subsetting a `SingleCellExperiment` breaks the `ScpModel` object

#58 cvanderaa opened 3 months ago
8
refactor: use QFeatures reading functions

#57 lgatto closed 3 months ago
0
Incorrect inference with scplainer

#56 cvanderaa closed 3 months ago
9
Small issue in scplainer: volcano plot

#55 shimin-chen opened 4 months ago
2
Check for > 1 non-NA values

#54 lgatto closed 2 months ago
9
scplainer: could not find function "scpModelWorkflow"

#53 shimin-chen closed 5 months ago
2
scplainer: Component analysis and reducedDims

#52 lgatto closed 3 months ago
6
GHA error

#51 lgatto closed 4 months ago
0
Scplainer

#50 cvanderaa closed 3 months ago
2
Issue46

#49 cvanderaa closed 5 months ago
2
DIA / LFQ compatibility

#48 prvst closed 3 months ago
6
Help to replicate graph

#47 prvst closed 8 months ago
2
Cite scp workflow chapter

#46 lgatto opened 8 months ago
2
Asca merge

#45 cvanderaa closed 6 months ago
0
Compute per cell metrics (and per feature?)

#44 cvanderaa opened 10 months ago
0
SCP.replication

#43 xinpengdun closed 11 months ago
1
feat: function to create a QFeatures object from DIANN output

#42 cvanderaa closed 2 months ago
3
Issue40

#41 cvanderaa closed 1 year ago
2
Missing values vignette

#40 lgatto opened 1 year ago
2
Renaming default branch

#39 cvanderaa closed 1 year ago
1
Rethink how coefficients of variation are computed

#38 cvanderaa opened 1 year ago
0
normByType function in advanced usage vignette

#37 steveb-123 closed 1 year ago
1
Fix scp vignette

#36 cvanderaa closed 1 year ago
2
Integrate disk-backed assays

#35 cvanderaa closed 1 year ago
1
refactor `divideByReference()`

#34 cvanderaa opened 2 years ago
1
Error plotting scp

#33 demar01 closed 1 year ago
4
Improve the readSCP vignette

#32 cvanderaa closed 2 years ago
4
apply medians over cols or colMedians

#31 lgatto closed 2 years ago
1
Documentation: create a downstream analysis vignette

#30 cvanderaa closed 2 years ago
1
Feature request: create a Shiny app

#29 cvanderaa opened 2 years ago
1
Improve vignettes with downstream analysis example

#28 cvanderaa closed 2 months ago
1
Minor: aggregatefeaturesoverassays

#27 edemmott closed 2 years ago
1
pep2qvalue missing?

#26 edemmott closed 2 years ago
3
computeSCR not working

#25 edemmott closed 2 years ago
7
Create an advanced vignette

#24 cvanderaa closed 2 years ago
1
Create a vignette dedicated to importing data to scp

#23 cvanderaa closed 3 years ago
1
`readSCP` breaks when channel annotation is a factor

#22 cvanderaa closed 3 years ago
1
Vignette/data import/readSCP

#21 edemmott closed 3 years ago
3
vignette header

#20 lgatto closed 3 years ago
1
Clean `mqScpData` example data

#19 cvanderaa closed 3 years ago
1
Deprecate `transferColDataToAssay`

#18 cvanderaa closed 3 years ago
4
refactor: rename arguments in `readSCP`

#17 cvanderaa closed 3 years ago
3
Bioconductor review 1

#16 cvanderaa closed 3 years ago
1