-
It's been suggested by @jindraivanek at FableConf to add Fantomas support to the REPL. I think this would be a very nice opt-in (users don't need to use it if they don't need it) and would improve the…
-
Thank you for the amazing tool. I met a problem when I used Ratatosk.
This is my command: Ratatosk correct -v -c 16 -s transcripts.stringtie.fa -l Tam.transcripts.fa -o out_long_reads
I got…
-
1. None of your examples had fastq read 1 and 2. How should these be input? Like...
Ratatosk correct -v -c 4 -s read_file1_1.fq.gz -s read_file1_2.fq.gz -s read_file2_1.fq.gz -s read_file2_2.fq.g…
-
Hi,
Is there a parameter to output fully corrected or almost fully corrected UL reads in fasta or fastq format?
Cheers,
-
Dear someone,
I don't have roof permission, how to install ratatosk?
make install
[ 44%] Built target bifrost_lib
[100%] Built target Ratatosk
Install the project...
-- Install configuration:…
-
# Please report
- [ 2.3.1] version of ABySS with `abyss-pe version`
- 2.3.1
- [ ] distribution of Linux with `lsb_release -d`
- [ ] Description: Red Hat Enterprise Linux Server release 7.9 …
-
Hello!
Do you think that it would it be possible to remove bifrost from the code (and from build) and add it as a requirement ? Using the bioconda package maybe ? (https://bioconda.github.io/recipes/…
-
There’s a discrepancy in the first command line example and explanatory paragraph.
Paragraph is:
Ratatosk corrects (Ratatosk correct) the long read file (-l in_long_reads.fastq) with 16 threads …
-
Hello,
Great tool! Would it be possible to have a Bioconda recipe for Ratatosk? This way it will also trigger the creation of Biocontainers (docker and singularity) that can be integrated in assemb…
-
Thank you for really amazing tool.
I have faced with some errors when I tried to use Ratatosk. Generally it was a time or memory limit errors. Execution have been stopped on the indexing stage 1, a…